Alignment-free sequence comparison for biologically realistic sequences of moderate length

DOI10.2202/1544-6115.1724MaRDI QIDQ458802zbMATH OpenOpenAlexFDO

Authors Conrad J. Burden, Junmei Jing, Susan R. Wilson

Publication date 8 October 2014

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL http://hdl.handle.net/1885/11466

zbMATH Keywords

biologically realistic sequenceD\(_2\) statistic

Mathematics Subject Classification ID

General biostatistics (92B15)

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Cited in

(7)

• Efficient Alignment Free Sequence Comparison with Bounded Mismatches
• Alignment-free sequence comparison with spaced k-mers.
• New powerful statistics for alignment-free sequence comparison under a pattern transfer model
• Statistical considerations underpinning an alignment-free sequence comparison method
• Comparison of Symbol Sequences: No Editing, No Alignment
• Extraction of high quality \(k\)-words for alignment-free sequence comparison
• Empirical distribution of \(k\)-word matches in biological sequences

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