Study of LZ-word distribution and its application for sequence comparison

DOI10.1016/J.JTBI.2013.07.008MaRDI QIDQ2632136zbMATH OpenOpenAlexWikidataFDO

Authors Qi Dai, Zhaofang Yan, Zhuoxing Shi, Xiaoqing Liu, Yuhua Yao, Pingan He

Publication date 14 May 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc7094135

zbMATH Keywords

Lempel-Ziv complexityphylogenetic analysisset operationword set

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20) Descriptive complexity and finite models (68Q19)

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Cites work

• scientific article; zbMATH DE number 699389 (Why is no real title available?)
• A generalization of Lempel-Ziv complexity and its application to the comparison of protein sequences
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• Biological Sequence Analysis
• Normalized Lempel-Ziv complexity and its application in bio-sequence analysis
• Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition
• Statistical methods in bioinformatics. An introduction.

Cited in

(7)

• A generalization of Lempel-Ziv complexity and its application to the comparison of protein sequences
• scientific article; zbMATH DE number 2010005 (Why is no real title available?)
• A novel DNA sequence similarity calculation based on simplified pulse-coupled neural network and Huffman coding
• Linear-Time Sequence Comparison Using Minimal Absent Words & Applications
• A novel statistical measure for sequence comparison on the basis of \(k\)-word counts
• Normalized Lempel-Ziv complexity and its application in bio-sequence analysis
• A novel representation of DNA sequence based on CMI coding

Describes a project that uses

Uses Software

• PHYLIP

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