Use of image texture analysis to find DNA sequence similarities

DOI10.1016/j.jtbi.2018.07.001zbMath1406.92449OpenAlexW2809852815WikidataQ57467619 ScholiaQ57467619MaRDI QIDQ1714243

Weiwei Li, Weiyang Chen, Bo Liao

Publication date: 31 January 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2018.07.001

zbMATH Keywords

entropyimage textureevolutionary relationshipsequences similarity

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20) Genetics and epigenetics (92D10) Linear transformations, semilinear transformations (15A04)

Uses Software

• MUSCLE
• T-coffee
• Clustal X
• CloudPhylo

Cites Work

• An improved model for whole genome phylogenetic analysis by Fourier transform
• A measure of DNA sequence similarity by Fourier transform with applications on hierarchical clustering
• Statistical Measures of DNA Sequence Dissimilarity under Markov Chain Models of Base Composition
• A measure of the similarity of sets of sequences not requiring sequence alignment.
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