Hidden Markov chains and the analysis of genome structure

DOI10.1016/0097-8485(92)80037-ZzbMATH Open0752.92015OpenAlexW1968063294WikidataQ105583536 ScholiaQ105583536MaRDI QIDQ4014710FDOQ4014710

Authors: Gary A. Churchill 

Publication date: 5 October 1992

Published in: Computers & Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/0097-8485(92)80037-z

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zbMATH Keywords

hidden Markov chain modeldiscrete compositional domainsgenome functionhuman genome segmentsmall complete genomes

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20)

Cited In (35)

• Statistical Analysis of Genomic Tag Data
• A discrete autoregressive process as a model for short-range correlations in DNA sequences
• Comparative statistical analysis of bacteria genomes in ``word context
• Hidden Markov models applied to DNA sequence analysis
• Discontinuous versus smooth regression
• Subsampling methods for genomic inference
• Posterior consistency for partially observed Markov models
• Particle-based likelihood inference in partially observed diffusion processes using generalised Poisson estimators
• Construction of a mathematical model of DNA in the form of a uniform Markov chain and perspectives of its application to gene recognition
• Hidden Markov model steady-state estimation
• Global Markov models for eukaryote nucleotide data
• Estimation of steady-state quantities of an HMM with some rarely generated emissions
• A Markovian approach for the prediction of mouse isochores
• Bayesian hidden Markov models in DNA sequence segmentation using R: the case of Simian Vacuolating virus (SV40)
• Large-scale multiple testing under dependence
• Generalized Hierarchical Markov Models for the Discovery of Length‐Constrained Sequence Features from Genome Tiling Arrays
• Bayesian analysis of isochores
• Online expectation maximization based algorithms for inference in hidden Markov models
• Statistical analysis of uniparental disomy data using hidden Markov models
• Hidden Markov model with Markovian emission
• A MARKOVIAN APPROACH FOR THE ANALYSIS OF THE GENE STRUCTURE
• Asymptotic properties of the maximum likelihood estimation in misspecified hidden Markov models
• Unsupervised statistical identification of genomic islands using oligonucleotide distributions with application to \textit{Vibrio} genomes
• Comparing the performance of a reversible jump Markov chain Monte Carlo algorithm for DNA sequences alignment
• Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition
• A Bayesian Approach to DNA Sequence Segmentation
• Non-stationary data segmentation with hidden evidential semi-Markov chains
• Speeding up HMM decoding and training by exploiting sequence repetitions
• A note on Bayesian inference for long-range dependence of a stationary two-state process
• Maximum likelihood estimation for hidden semi-Markov models
• HMM with emission process resulting from a special combination of independent Markovian emissions
• Effective hidden Markov models for detecting splicing junction sites in DNA sequences
• Consistency of the maximum likelihood estimator for general hidden Markov models
• Statistical methods for DNA sequence segmentation
• Algorithmic Learning Theory

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