Detecting locus acquisition events in gene trees

DOI10.4230/LIPICS.WABI.2017.5MaRDI QIDQ5111795zbMATH OpenOpenAlexFDO

Authors Michał Aleksander Ciach, Anna Muszewska, Paweł Górecki

Publication date 27 May 2020

Full work available at URL https://drops.dagstuhl.de/opus/volltexte/2017/7654/pdf/LIPIcs-WABI-2017-5.pdf/

zbMATH Keywords

rankgene duplicationspeciationhorizontal gene transfertaxongene lossranked species tree

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08)

Recommendations

• Inferring evolutionary scenarios in the duplication, loss and horizontal gene transfer model
• Indirect identification of horizontal gene transfer
• Towards identifying lateral gene transfer events
• Computing and Combinatorics
• Identifying a species tree subject to random lateral gene transfer

Cites work

• scientific article; zbMATH DE number 1512678 (Why is no real title available?)
• DLS-trees: a model of evolutionary scenarios
• Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
• Reconciling a gene tree to a species tree under the duplication cost model

Cited in

(5)

• Algorithms for detecting complete and partial horizontal gene transfers: theory and a practice
• How to identify laterally transferred genes?
• On partial gene transfer and its impact on gene tree reconstruction
• Inferring evolutionary scenarios in the duplication, loss and horizontal gene transfer model
• A new algorithm for inferring hybridization events based on the detection of horizontal gene transfers

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