Composite likelihood modeling of neighboring site correlations of DNA sequence substitution rates

DOI10.2202/1544-6115.1391zbMATH Open1276.92085OpenAlexW2056934980WikidataQ37339463 ScholiaQ37339463MaRDI QIDQ2864041FDOQ2864041

Authors: Ling Deng, Dirk F. Moore 

Publication date: 5 December 2013

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc3839231

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zbMATH Keywords

composite likelihoodparametric bootstrapphylogenybivariate negative binomial distributionsubstitution rate

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Cited In (5)

• Pseudo-likelihood for Non-reversible Nucleotide Substitution Models with Neighbour Dependent Rates
• Estimating the relative rate of recombination to mutation in bacteria from single-locus variants using composite likelihood methods
• Calculating independent contrasts for the comparative study of substitution rates
• Links between maximum likelihood and maximum parsimony under a simple model of site substitution
• Linking population genetics to phylogenetics

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