Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent

DOI10.1101/010199zbMATH Open1357.92057OpenAlexW2408898951WikidataQ39692538 ScholiaQ39692538MaRDI QIDQ504092FDOQ504092

Authors: Graham Jones 

Publication date: 25 January 2017

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-016-1034-0

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zbMATH Keywords

Markov chain Monte CarloBayesian analysismultispecies coalescentspecies delimitation

Mathematics Subject Classification ID

Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Cites Work

• Reconstructing an ancestral genome using minimum segments duplications and reversals.

Cited In (4)

• Enumeration of coalescent histories for caterpillar species trees and \(p\)-pseudocaterpillar gene trees
• Statistically consistent rooting of species trees under the multispecies coalescent model
• Ranked subtree prune and regraft
• Improving divergence time estimation in phylogenetics: more taxa vs. longer sequences

Uses Software

• CODA
• BEAST
• STRUCTURE

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