Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent

DOI10.1101/010199MaRDI QIDQ504092zbMATH OpenOpenAlexWikidataFDO

Authors Graham Jones

Publication date 25 January 2017

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial 4.0 International

Full work available at URL https://doi.org/10.1007/s00285-016-1034-0

zbMATH Keywords

Markov chain Monte CarloBayesian analysismultispecies coalescentspecies delimitation

Mathematics Subject Classification ID

Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

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• Identifiability and reconstructibility of species phylogenies under a modified coalescent

Cites work

• Reconstructing an ancestral genome using minimum segments duplications and reversals.

Cited in

(4)

• Enumeration of coalescent histories for caterpillar species trees and \(p\)-pseudocaterpillar gene trees
• Statistically consistent rooting of species trees under the multispecies coalescent model
• Ranked subtree prune and regraft
• Improving divergence time estimation in phylogenetics: more taxa vs. longer sequences

Describes a project that uses

Uses Software

• STRUCTURE
• BEAST
• CODA

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