A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses

DOI10.1016/J.COMPBIOLCHEM.2012.06.004MaRDI QIDQ2359342zbMATH OpenOpenAlexWikidataFDO

Authors Yu-Nong Gong, Guang-Wu Chen, Marc A. Suchard

Publication date 28 June 2017

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2012.06.004

zbMATH Keywords

mutual informationco-evolutioninfluenza virusamino acid substitution matrixBayesian evolutionary analysis sampling trees

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Monte Carlo methods (65C05) Biochemistry, molecular biology (92C40) Problems related to evolution (92D15) Isomorphism problems in graph theory (reconstruction conjecture, etc.) and homomorphisms (subgraph embedding, etc.) (05C60)

Recommendations

• Flow of information during an evolutionary process: the case of influenza A viruses
• Co-evolution and Information Signals in Biological Sequences
• Co-evolution and information signals in biological sequences
• Novel algorithm for phylogenetic analysis of proteins: application to analysis of the evolution of H5N1 influenza viruses
• Computation of mutual information from hidden Markov models

Cites work

• Counting labeled transitions in continuous-time Markov models of evolution

Cited in

(3)

• Co-evolution and Information Signals in Biological Sequences
• Flow of information during an evolutionary process: the case of influenza A viruses
• Novel algorithm for phylogenetic analysis of proteins: application to analysis of the evolution of H5N1 influenza viruses

Describes a project that uses

Uses Software

• InterMap3D
• MUSCLE
• BEAST

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