A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses

DOI10.1016/j.compbiolchem.2012.06.004zbMath1365.92028OpenAlexW2005650564WikidataQ47308895 ScholiaQ47308895MaRDI QIDQ2359342

Guang-Wu Chen, Marc A. Suchard, Yu-Nong Gong

Publication date: 28 June 2017

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2012.06.004

zbMATH Keywords

mutual informationco-evolutioninfluenza virusamino acid substitution matrixBayesian evolutionary analysis sampling trees

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Monte Carlo methods (65C05) Biochemistry, molecular biology (92C40) Isomorphism problems in graph theory (reconstruction conjecture, etc.) and homomorphisms (subgraph embedding, etc.) (05C60)

Uses Software

• BEAST
• MUSCLE
• InterMap3D

Cites Work

• Counting labeled transitions in continuous-time Markov models of evolution