Co-evolution and information signals in biological sequences

DOI10.1016/J.TCS.2010.10.040zbMATH Open1221.92037OpenAlexW2118071013WikidataQ57253044 ScholiaQ57253044MaRDI QIDQ534561FDOQ534561

Authors: L. Dib, Alessandra Carbone 

Publication date: 18 May 2011

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tcs.2010.10.040

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zbMATH Keywords

entropyDNA sequencesrandomizationmutual informationphylogenyevolutionconservationinformation contentprotein sequencesprotein structures

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Information theory (general) (94A15) Computational methods for problems pertaining to biology (92-08)

Cites Work

• Physical complexity of symbolic sequences

Cited In (3)

• Co-evolution and Information Signals in Biological Sequences
• A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses
• Development of novel classical and quantum information theory based methods for the detection of compensatory mutations in MSAs

Uses Software

• Seq-Gen
• PSI-BLAST
• BLAST
• VMD
• siteFiNDER 3D
• Rate4Site

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