Co-evolution and information signals in biological sequences

DOI10.1016/J.TCS.2010.10.040MaRDI QIDQ534561zbMATH OpenOpenAlexWikidataFDO

Authors L. Dib, Alessandra Carbone

Publication date 18 May 2011

Published in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tcs.2010.10.040

zbMATH Keywords

entropyDNA sequencesrandomizationmutual informationphylogenyevolutionconservationinformation contentprotein sequencesprotein structures

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Information theory (general) (94A15) Computational methods for problems pertaining to biology (92-08)

Recommendations

• Co-evolution and Information Signals in Biological Sequences
• Information theory and biological sequences: insights from an evolutionary perspective
• On the entropy of protein families
• Natural vs. random protein sequences: discovering combinatorics properties on amino acid words
• Information theory in genome analysis

Cites work

• Physical complexity of symbolic sequences

Cited in

(3)

• Co-evolution and Information Signals in Biological Sequences
• A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses
• Development of novel classical and quantum information theory based methods for the detection of compensatory mutations in MSAs

Describes a project that uses

Uses Software

• Rate4Site
• siteFiNDER 3D
• VMD
• BLAST
• PSI-BLAST
• Seq-Gen

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