VMD
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swMATH18651MaRDI QIDQ30483FDOQ30483
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Official website: http://www.ks.uiuc.edu/Research/vmd/
Cited In (only showing first 100 items - show all)
- Numerical methods for the Poisson-Fermi equation in electrolytes
- A novel canonical dual computational approach for prion AGAAAAGA amyloid fibril molecular modeling
- Qprop
- AMBER
- Algorithmic challenges in computational molecular biophysics
- SimMechanics
- APBS
- CHARMM
- LAMMPS
- DMOL3
- PLUMED
- AdResS
- ESPResSo
- PetFMM
- PNFFT
- Browndye
- GROMOS
- Macrodox
- SDA
- DYANA
- FFTSVD
- Fastcap
- LINCS
- DL_POLY
- DL_POLY_3
- AutoDock Vina
- M.DynaMix
- NAMD2
- PyMOL
- CIF2Cell
- edgecount
- Chimera
- Ribosome Builder
- TK
- SETTLE
- PDB2PQR
- X-PLOR
- SYBYL
- OVITO
- Avogadro
- Jmol
- 2Dhp90
- DeepVS
- MINT
- PAFMPB
- VARNA
- DelPhi Web Server
- I-TASSER
- PBEQ-Solver
- SDPBS
- QMEAN
- SDPBS web server for calculation of electrostatics of ionic solvated biomolecules
- MUI
- BioSG
- MMM2D
- FPV
- RasMol
- TABI
- VENLO
- Voreen
- WEAVE
- Open Babel
- OpenMM
- MOLDEN
- MOE
- CHARMM-GUI
- DelEnsembleElec
- P-LINCS
- Apbsmem
- ms2
- Mdtraj
- PDB-REPRDB
- PROMOTIF
- DockingApp
- RASPA
- YASARA
- MAVEN
- FMM3D
- CNS
- NMRPipe
- ODEPACK++
- VMD-XPLOR
- Xplor-NIH
- GalaxyDock
- GalaxySite
- SODOCK
- CPPTRAJ
- PyTraj
- STRIDE
- DelPhiForce
- BioPhysConnectoR
- siteFiNDER 3D
- ASAView
- CHARMM36m
- ConSurf
- Rate4Site
- ACD/ChemSketch
- FlexProt
- Minimal formulation of joint motion for biomechanisms
- DelEnsembleElec: computing ensemble-averaged electrostatics using DelPhi
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