APBS

swMATH5766WikidataQ65072984 ScholiaQ65072984MaRDI QIDQ17905FDOQ17905

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Official website: http://www.poissonboltzmann.org

Source code repository: https://github.com/Electrostatics/electrostatics.github.io

Cited In (only showing first 100 items - show all)

• Image charge methods for a three-dielectric-layer hybrid solvation model of biomolecules
• Radial basis collocation method and quasi-Newton iteration for nonlinear elliptic problems
• Geometry-guided computation of 3D electrostatics for large biomolecules
• Title not available (Why is that?)
• Molecular dynamics simulations of tubulin structure and calculations of electrostatic properties of microtubules
• Progress in developing Poisson-Boltzmann equation solvers
• The Finite Element Approximation of the Nonlinear Poisson–Boltzmann Equation
• Stability of a Cylindrical Solute-Solvent Interface: Effect of Geometry, Electrostatics, and Hydrodynamics
• New solution decomposition and minimization schemes for Poisson-Boltzmann equation in calculation of biomolecular electrostatics
• ISIM: A Program for Grand Canonical Monte Carlo Simulations of the Ionic Environment of Biomolecules
• A Poisson-Boltzmann equation test model for protein in spherical solute region and its applications
• A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules
• Parallel higher-order boundary integral electrostatics computation on molecular surfaces with curved triangulation
• A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver
• A boundary integral Poisson-Boltzmann solvers package for solvated bimolecular simulations
• AFMPB: an adaptive fast multipole Poisson-Boltzmann solver for calculating electrostatics in biomolecular systems
• ISIM
• AMBER
• NAMD
• PRONTO3D
• Gromacs
• CHARMM
• PetFMM
• A new analysis of electrostatic free energy minimization and Poisson-Boltzmann equation for protein in ionic solvent
• Delphi
• Browndye
• FISHPAK
• Macrodox
• MIBPB
• SDA
• PIM
• UHBD
• AFMPB
• FFTSVD
• Fastcap
• LINCS
• PyMOL
• FEtk
• GAMER
• PHG
• F2Dock
• SETTLE
• MolEnergy
• PDB2PQR
• TexMol
• MCCE2
• QTM
• TMSmesh
• BIEPACK
• PAFMPB
• DelPhi Web Server
• PBEQ-Solver
• SDPBS
• PyGBe
• tabipb
• VCMM
• Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy
• SDPBS web server for calculation of electrostatics of ionic solvated biomolecules
• TOMOBFLOW
• TABI
• VMD
• SG
• FreeSASA
• Apbsmem
• SMPBS
• ESES
• ReebHanTun
• Intersurf
• Lis
• DelPhiPKa
• A biomolecular electrostatics solver using python, GPUs and boundary elements that can handle solvent-filled cavities and stern layers
• DASHMM Accelerated Adaptive Fast Multipole Poisson-Boltzmann Solver on Distributed Memory Architecture
• MPBEC
• DAFMPB
• Multiscale geometric modeling of macromolecules. I: Cartesian representation
• Title not available (Why is that?)
• Multiscale molecular dynamics using the matched interface and boundary method
• Adaptive numerical treatment of elliptic systems on manifolds
• On regularization of charge singularities in solving the Poisson-Boltzmann equation with a smooth solute-solvent boundary
• A fast variational method for the construction of resolution adaptive \(C^2\)-smooth molecular surfaces
• Symmetry reduced dynamics of charged molecular strands
• Modeling and computation of heterogeneous implicit solvent and its applications for biomolecules
• Biomolecular electrostatics using a fast multipole BEM on up to 512 GPUs and a billion unknowns
• A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule
• A rapid boundary integral equation technique for protein electrostatics
• A new minimization protocol for solving nonlinear Poisson-Boltzmann mortar finite element equation
• Accurate evaluation of electrostatics for macromolecules in solution
• Fully implicit ADI schemes for solving the nonlinear Poisson-Boltzmann equation
• An efficient higher-order fast multipole boundary element solution for Poisson-Boltzmann-based molecular electrostatics
• Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes. I: Finite element solutions
• Local and parallel finite element algorithms for eigenvalue problems
• Fast analytical methods for macroscopic electrostatic models in biomolecular simulations
• ``New-version-fast-multipole-method accelerated electrostatic calculations in biomolecular sys\-tems
• A data-driven framework for sparsity-enhanced surrogates with arbitrary mutually dependent randomness
• A super-Gaussian Poisson-Boltzmann model for electrostatic free energy calculation: smooth dielectric distribution for protein cavities and in both water and vacuum states
• Parallel Newton-Krylov-Schwarz algorithms for the three-dimensional Poisson-Boltzmann equation in numerical simulation of colloidal particle interactions
• Modeling electrokinetic flows by the smoothed profile method
• A Poisson-Boltzmann solver on irregular domains with Neumann or Robin boundary conditions on non-graded adaptive grid
• Browndye: A software package for Brownian dynamics
• The de Rham-Hodge analysis and modeling of biomolecules

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