A Poisson-Boltzmann solver on irregular domains with Neumann or Robin boundary conditions on non-graded adaptive grid
DOI10.1016/j.jcp.2011.02.010zbMath1369.76033OpenAlexW1986577020MaRDI QIDQ544559
Frédéric Gibou, Ásdís Helgadóttir
Publication date: 15 June 2011
Published in: Journal of Computational Physics (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jcp.2011.02.010
finite difference methodNeumann boundary conditionlevel setRobin boundary conditionirregular domainadaptive gridoctreePoisson-Boltzmann solver
Finite difference methods applied to problems in fluid mechanics (76M20) Rarefied gas flows, Boltzmann equation in fluid mechanics (76P05) Mesh generation, refinement, and adaptive methods for boundary value problems involving PDEs (65N50) Finite difference methods for boundary value problems involving PDEs (65N06)
Related Items
Uses Software
Cites Work
- Adaptive numerical method for Poisson-Boltzmann equation and its application
- A fourth order accurate discretization for the Laplace and heat equations on arbitrary domains, with applications to the Stefan problem
- A numerical scheme for the Stefan problem on adaptive Cartesian grids with supralinear convergence rate
- A supra-convergent finite difference scheme for the variable coefficient Poisson equation on non-graded grids
- A second order accurate projection method for the incompressible Navier-Stokes equations on non-graded adaptive grids
- A finite difference method and analysis for 2D nonlinear Poisson-Boltzmann equations
- A second order accurate level set method on non-graded adaptive Cartesian grids
- An efficient fluid-solid coupling algorithm for single-phase flows
- Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations
- Numerical analysis of blood flow in the heart
- Modeling forced liquid convection in rectangular microchannels with electrokinetic effects
- Continuum solvation model: Computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equation
- A level set approach for the numerical simulation of dendritic growth
- A second-order-accurate symmetric discretization of the Poisson equation on irregular domains
- Accurate evaluation of electrostatics for macromolecules in solution
- Local level set method in high dimension and codimension
- Geometric integration over irregular domains with application to level-set methods
- A new minimization protocol for solving nonlinear Poisson-Boltzmann mortar finite element equation
- A supra-convergent finite difference scheme for the Poisson and heat equations on irregular domains and non-graded adaptive Cartesian grids
- Efficient symmetric discretization for the Poisson, heat and Stefan-type problems with Robin boundary conditions
- The Immersed Interface Method for Elliptic Equations with Discontinuous Coefficients and Singular Sources
- A Jump Condition Capturing Finite Difference Scheme for Elliptic Interface Problems
- The Finite Element Approximation of the Nonlinear Poisson–Boltzmann Equation
- Adaptive mesh enrichment for the Poisson-Boltzmann equation
- Adaptive numerical treatment of elliptic systems on manifolds
- Unnamed Item
- Unnamed Item