scientific article; zbMATH DE number 5669486
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Publication:3406191
zbMATH Open1186.92005MaRDI QIDQ3406191FDOQ3406191
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Publication date: 12 February 2010
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- Multi-scale fusion network: a new deep learning structure for elliptic interface problems
- A Poisson-Boltzmann solver on irregular domains with Neumann or Robin boundary conditions on non-graded adaptive grid
- Regularization of Poisson-Boltzmann-type equations with singular source terms using the range-separated tensor format
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- Fast integral equation methods for the modified Helmholtz equation
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- Progress in developing Poisson-Boltzmann equation solvers
- A local approximation of fundamental measure theory incorporated into three dimensional Poisson-Nernst-Planck equations to account for hard sphere repulsion among ions
- A new discontinuous Galerkin method for the nonlinear Poisson-Boltzmann equation
- A note on cyclic reduction Poisson solvers with application to bioconvective phenomena problems
- Fast and scalable algorithms for constructing solvent-excluded surfaces of large biomolecules
- On preconditioning the treecode-accelerated boundary integral (TABI) Poisson-Boltzmann solver
- Numerical methods for the Poisson-Fermi equation in electrolytes
- Operator splitting ADI schemes for pseudo-time coupled nonlinear solvation simulations
- High-order compact finite difference methods for solving the high-dimensional Helmholtz equations
- An implicit boundary integral method for computing electric potential of macromolecules in solvent
- Discontinuous bubble immersed finite element method for Poisson-Boltzmann equation
- On developing stable finite element methods for pseudo-time simulation of biomolecular electrostatics
- Fast multipole method for 3-D Poisson-Boltzmann equation in layered electrolyte-dielectric media
- A new box iterative method for a class of nonlinear interface problems with application in solving Poisson-Boltzmann equation
- New solution decomposition and minimization schemes for Poisson-Boltzmann equation in calculation of biomolecular electrostatics
- A nonlocal modified Poisson-Boltzmann equation and finite element solver for computing electrostatics of biomolecules
- Finite volume element method for predicting electrostatics of a biomolecule immersed in an ionic solvent
- Poisson-Boltzmann equation boundary conditions for biological applications
- A flux-jump preserved gradient recovery technique for accurately predicting the electrostatic field of an immersed biomolecule
- A computational model of protein induced membrane morphology with geodesic curvature driven protein-membrane interface
- A Poisson-Boltzmann equation test model for protein in spherical solute region and its applications
- Direct meshless local Petrov-Galerkin method for elliptic interface problems with applications in electrostatic and elastostatic
- Geometric multigrid algorithms for elliptic interface problems using structured grids
- Reliable computer simulation methods for electrostatic biomolecular models based on the Poisson-Boltzmann equation
- Prospects of tensor-based numerical modeling of the collective electrostatics in many-particle systems
- A boundary integral Poisson-Boltzmann solvers package for solvated bimolecular simulations
- A new analysis of electrostatic free energy minimization and Poisson-Boltzmann equation for protein in ionic solvent
- Enriched gradient recovery for interface solutions of the Poisson-Boltzmann equation
- Fast iterative method for local steric Poisson-Boltzmann theories in biomolecular solvation
- Goal-oriented adaptivity and multilevel preconditioning for the Poisson-Boltzmann equation
- Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy
- SDPBS web server for calculation of electrostatics of ionic solvated biomolecules
- Convergence of Physics-Informed Neural Networks Applied to Linear Second-Order Elliptic Interface Problems
- A fourth order finite difference method for solving elliptic interface problems with the FFT acceleration
- A reduced basis method for the nonlinear Poisson-Boltzmann equation
- A new numerical method for nonlocal electrostatics in biomolecular simulations
- A Cartesian treecode for screened Coulomb interactions
- Residual type a posteriori error estimates for the time-dependent Poisson-Nernst-Planck equations
- Multigrid lattice Boltzmann method for accelerated solution of elliptic equations
- Solving fluctuation-enhanced Poisson-Boltzmann equations
- A fast solver for boundary integral equations of the modified Helmholtz equation
- Finite element modeling of biomolecular systems in ionic solution
- A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule
- The immersed interface method for Helmholtz equations with degenerate diffusion
- Galerkin-Chebyshev pseudo spectral method and a split step new approach for a class of two dimensional semi-linear parabolic equations of second order
- Parallel adaptive finite element algorithms for solving the coupled electro-diffusion equations
- Second order finite-difference ghost-point multigrid methods for elliptic problems with discontinuous coefficients on an arbitrary interface
- A new boundary integral equation for molecular electrostatics with charges over whole space
- INN: interfaced neural networks as an accessible meshless approach for solving interface PDE problems
- Analysis of the mean field free energy functional of electrolyte solution with nonhomogenous boundary conditions and the generalized PB/PNP equations with inhomogeneous dielectric permittivity
- Efficient and qualified mesh generation for Gaussian molecular surface using adaptive partition and piecewise polynomial approximation
- An Adaptive, Finite Difference Solver for the Nonlinear Poisson-Boltzmann Equation with Applications to Biomolecular Computations
- Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes. I: Finite element solutions
- Regularization methods for the Poisson-Boltzmann equation: comparison and accuracy recovery
- Examining sharp restart in a Monte Carlo method for the linearized Poisson-Boltzmann equation
- Solving parametric elliptic interface problems via interfaced operator network
- Efficient generation of membrane and solvent tetrahedral meshes for ion channel finite element calculation
- Computational modeling of protein conformational changes -- application to the opening SARS-CoV-2 spike
- A Poisson-Boltzmann equation test model for protein in spherical solute region and its applications
- Some random batch particle methods for the Poisson-Nernst-Planck and Poisson-Boltzmann equations
- Existence, uniqueness, and a comparison of nonintrusive methods for the stochastic nonlinear Poisson-Boltzmann equation
- Integrability and dynamics of the Poisson-Boltzmann equation in simple geometries
- A new eighth-order implicit finite difference method to solve the three-dimensional Helmholtz equation
- Ion transport in dipolar medium. I: A local dielectric Poisson-Nernst-Planck/Poisson-Boltzmann model
- A new FFT-based algorithm to compute Born radii in the generalized Born theory of biomolecule solvation
- A method of boundary equations for nonlinear Poisson-Boltzmann equation arising in biomolecular systems
- A finite volume method to solve the Poisson equation with jump conditions and surface charges: application to electroporation
- A Domain Decomposition Method for the Poisson--Boltzmann Solvation Models
- Additive Schwarz methods for semilinear elliptic problems with convex energy functionals: convergence rate independent of nonlinearity
- Solution decomposition for the nonlinear Poisson-Boltzmann equation using the range-separated tensor format
- Accurate p\(K_a\) computation using matched interface and boundary (MIB) method based Poisson-Boltzmann solver
- A posteriori analysis and efficient refinement strategies for the Poisson-Boltzmann equation
- A brief review of continuous models for ionic solutions: the Poisson-Boltzmann and related theories
- Dynamics of Poisson-Boltzmann equations: ``hidden mechanisms for Gouy-Chapman layer and beyond
- Fast solution of the linearized Poisson-Boltzmann equation with nonaffine parametrized boundary conditions using the reduced basis method
- PB-Steric Equations: A General Model of Poisson–Boltzmann Equations
- A stochastic solver of the generalized Born model
- Study of local and nonlocal Poisson-Boltzmann equations for linear and nonlinear models with spherical symmetry
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