The de Rham-Hodge analysis and modeling of biomolecules

DOI10.1007/s11538-020-00783-2zbMath1448.92158arXiv1908.00572OpenAlexW3048242768WikidataQ98281415 ScholiaQ98281415MaRDI QIDQ2195628

Jiahui Chen, Yiying Tong, Menglun Wang, Guo-Wei Wei, Run-Dong Zhao

Publication date: 27 August 2020

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1908.00572

zbMATH Keywords

algebraic topologydifferential geometryde Rham-Hodge theorycryo-EM analysismacromolecular flexibilitymacromolecular Hodge mode analysis

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Applications of local differential geometry to the sciences (53B50) Classical topics in algebraic topology (55M99)

Related Items (5)

Persistent path Laplacian ⋮ Evolutionary de Rham-Hodge method ⋮ HERMES: persistent spectral graph software ⋮ Biomolecular topology: modelling and analysis ⋮ Neighborhood hypergraph model for topological data analysis

Uses Software

• APBS
• CHARMM
• MIBPB
• TABI
• ReebHanTun
• TopologyNet
• tabipb

Cites Work

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