swMATH8106MaRDI QIDQ20120FDOQ20120
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Official website: http://www.math.msu.edu/~wei/MIBPB/
Cited In (only showing first 100 items - show all)
- Biomolecular surface construction by PDE transform
- Quantum dynamics in continuum for proton transport. II: Variational solvent-solute interface
- The de Rham-Hodge analysis and modeling of biomolecules
- A relaxed weak Galerkin method for elliptic interface problems with low regularity
- Weak Galerkin methods for second order elliptic interface problems
- A radial basis function meshless numerical method for solving interface problems in irregular domains
- Progress in developing Poisson-Boltzmann equation solvers
- An implicit boundary integral method for computing electric potential of macromolecules in solvent
- On developing stable finite element methods for pseudo-time simulation of biomolecular electrostatics
- Efficient calculation of fully resolved electrostatics around large biomolecules
- A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules
- Parallel higher-order boundary integral electrostatics computation on molecular surfaces with curved triangulation
- High-order fractional partial differential equation transform for molecular surface construction
- A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver
- Second-order Poisson-Nernst-Planck solver for ion transport
- A topological approach for protein classification
- AMBER
- APBS
- CHARMM
- Delphi
- UHBD
- AFMPB
- FFTSVD
- PDB2PQR
- MCCE2
- PDB_Hydro
- TMSmesh
- IIMPACK
- BIEPACK
- PAFMPB
- PoPMuSiC
- AQUASOL
- DelPhi Web Server
- DOMpro
- PBEQ-Solver
- Profunc
- SDPBS
- UProC
- PyGBe
- tabipb
- VCMM
- Differential geometry based solvation model. I: Eulerian formulation
- Differential geometry based solvation model II: Lagrangian formulation
- SDPBS web server for calculation of electrostatics of ionic solvated biomolecules
- TOMOBFLOW
- TABI
- SG
- FreeSASA
- FoldX
- HexServer
- PAComplex
- PUDGE
- SAWTED
- SIB-BLAST
- Apbsmem
- SMPBS
- ESES
- ReebHanTun
- Lis
- DelPhiForce
- DelPhiPKa
- DASHMM Accelerated Adaptive Fast Multipole Poisson-Boltzmann Solver on Distributed Memory Architecture
- DAFMPB
- Geometric and electrostatic modeling using molecular rigidity functions
- Multiscale geometric modeling of macromolecules. I: Cartesian representation
- A new Poisson-Nernst-Planck model with ion-water interactions for charge transport in ion channels
- Impact of geometric, thermal and tunneling effects on nano-transistors
- Second order method for solving 3D elasticity equations with complex interfaces
- MIB method for elliptic equations with multi-material interfaces
- Extended HDG methods for second order elliptic interface problems
- MIB Galerkin method for elliptic interface problems
- NanoShaper
- Modeling and computation of heterogeneous implicit solvent and its applications for biomolecules
- A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule
- A Galerkin formulation of the MIB method for three dimensional elliptic interface problems
- Variational multiscale models for charge transport
- Fully implicit ADI schemes for solving the nonlinear Poisson-Boltzmann equation
- An interface-fitted mesh generator and virtual element methods for elliptic interface problems
- Adaptively deformed mesh based interface method for elliptic equations with discontinuous coefficients
- DelPhi web server: A comprehensive online suite for electrostatic calculations of biological macromolecules and their complexes
- A new weak Galerkin finite element method for elliptic interface problems
- Interpolating stabilized moving least squares (MLS) approximation for 2D elliptic interface problems
- Pseudo-transient ghost fluid methods for the Poisson-Boltzmann equation with a two-component regularization
- A super-Gaussian Poisson-Boltzmann model for electrostatic free energy calculation: smooth dielectric distribution for protein cavities and in both water and vacuum states
- New finite element iterative methods for solving a nonuniform ionic size modified Poisson-Boltzmann equation
- A meshless finite difference method for elliptic interface problems based on pivoted QR decomposition
- A new primal-dual weak Galerkin method for elliptic interface problems with low regularity assumptions
- Discontinuous bubble immersed finite element method for Poisson-Boltzmann-Nernst-Planck model
- A hybrid solver of size modified Poisson-Boltzmann equation by domain decomposition, finite element, and finite difference
- Fast and scalable algorithms for constructing solvent-excluded surfaces of large biomolecules
- On preconditioning the treecode-accelerated boundary integral (TABI) Poisson-Boltzmann solver
- Finite volume formulation of the MIB method for elliptic interface problems
- A flux-jump preserved gradient recovery technique for accurately predicting the electrostatic field of an immersed biomolecule
- Computing electrostatic binding energy with the TABI Poisson-Boltzmann solver
- Matched interface and boundary method for elasticity interface problems
- Modeling and computation of heterogeneous implicit solvent and its applications for biomolecules
- A regularization approach for solving the super-Gaussian Poisson-Boltzmann model with heterogeneous dielectric functions
- A two-component matched interface and boundary (MIB) regularization for charge singularity in implicit solvation
- DelPhi
- A Domain Decomposition Method for the Poisson--Boltzmann Solvation Models
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