AMBER
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AMBER Q14073
Cited in
(only showing first 100 items - show all)- GPAMM-software package for molecular dynamics on graphical processing units
- Time-dependent density functional theory
- The Java environment for nature-inspired approaches (JENA): a workbench for biocomputing and biomodelling enthusiasts
- The General Utility Lattice Program (<scp>GULP</scp>)
- A GPU-based large-scale Monte Carlo simulation method for systems with long-range interactions
- Molecular dynamics simulations study of influence of Tyr422Ala mutation on transcriptional enhancer activation domain 4 (TEAD4) and transcription co-activators complexes
- Multiresolution molecular mechanics: adaptive analysis
- DelEnsembleElec: computing ensemble-averaged electrostatics using DelPhi
- Quantum Mechanics/Classical Mechanics Modeling of Biological Systems
- Investigating protein-protein and protein-ligand interactions by molecular dynamics simula\-tions
- Classical investigation of long-range coherence in biological systems
- Modern methods and software systems of molecular modeling and application of behavior algebra
- Liouville-type equations for the n-particle distribution functions of an open system
- Quantum dynamics in continuum for proton transport. II: Variational solvent-solute interface
- The adaptive MSINR algorithm to improve error rate for channel equalization
- Virtual model validation of complex multiscale systems: applications to nonlinear elastostatics
- Parallel molecular dynamics with irregular domain decomposition
- Visualising business processes
- Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model
- Spectral accuracy in fast Ewald-based methods for particle simulations
- Molecular dynamics simulations of tubulin structure and calculations of electrostatic properties of microtubules
- Nonlinear multiscale modeling of polymer materials
- An improved thermal model for SPH metal cutting simulations on GPU
- Low‐Resolution Molecular Dynamics Simulations of the 30S Ribosomal Subunit
- Statistical shape analysis. With applications in R
- Efficient implementation of the many-body reactive bond order (REBO) potential on GPU
- scientific article; zbMATH DE number 1250624 (Why is no real title available?)
- Massively parallel Monte Carlo for many-particle simulations on GPUs
- Free energy analysis of protein-DNA binding: The EcoRI endonuclease-DNA complex
- A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver
- GPAMM
- IMD
- GAMESS
- NAMD
- Gromacs
- TINKER
- WebMO
- CHARMM
- LAMMPS
- CPMD
- DESMOND
- PLUMED
- AdResS
- DesParO
- MIBPB
- MorphoJ
- DL_POLY
- DL_POLY_3
- NAMD2
- BALL
- Qmd-plot
- BioSPI
- SAMG
- PDB2PQR
- PAST
- shapes
- CP2K
- MINT
- VARNA
- geomorph
- MYNTS
- HOOMD-blue
- PuReMD
- GROW
- LAMA
- VMD
- OpenMM
- RUMD
- DynamO
- TREMOLO-X
- WHAM
- ACEMD
- Osprey
- DelEnsembleElec
- AutoNester
- ChemoCR
- LC-GAP
- ModelCompare
- ms2
- PackAssistant
- ProMiner
- Simit
- JENA
- MetaPlab
- RASPA
- MDSimAid
- ORCA
- SCOWLP
- DL_MONTE
- dlmontepython
- Predicting the efficiency of UAG translational stop signal through studies of physicochemical properties of its composite mono- and dinucleotides
- Structural and energetic comparison of the complexes of aminoglycosides with the model of the ribosomal A-site
- Adaptive thermostats for noisy gradient systems
- A model for short -neurotoxin bound to nicotinic acetylcholine receptor from Torpedo californica: Comparison with long-chain -neurotoxins and -conotoxins
- Force Field Modelling of Conformational Energies
- scientific article; zbMATH DE number 2090682 (Why is no real title available?)
- A new numerical method for nonlocal electrostatics in biomolecular simulations
- OpenMolcas
- Efficient communication and collection with compact normal forms
- An improved fast multipole method for electrostatic potential calculations in a class of coarse-grained molecular simulations
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