Cited in
(70)- tricubic-treecodes
- A kernel-independent treecode for general Rotne-Prager-Yamakawa tensor
- A Treecode Algorithm for 3D Stokeslets and Stresslets
- Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy
- Modeling and computation of heterogeneous implicit solvent and its applications for biomolecules
- SDPBS web server for calculation of electrostatics of ionic solvated biomolecules
- A Cartesian FMM-accelerated Galerkin boundary integral Poisson-Boltzmann solver
- A biomolecular electrostatics solver using python, GPUs and boundary elements that can handle solvent-filled cavities and stern layers
- New solution decomposition and minimization schemes for Poisson-Boltzmann equation in calculation of biomolecular electrostatics
- Harmonic Surface Mapping Algorithm for Electrostatic Potentials in an Atomistic/Continuum Hybrid Model for Electrolyte Solutions
- Fully implicit ADI schemes for solving the nonlinear Poisson-Boltzmann equation
- HSMA3D
- Efficient implementation of the Barnes-Hut octree algorithm for Monte Carlo simulations of charged systems
- The de Rham-Hodge analysis and modeling of biomolecules
- NAMD
- APBS
- CHARMM
- MIBPB
- UHBD
- AFMPB
- FFTSVD
- HOT
- AFEPack
- PDB2PQR
- TMSmesh
- pvfmm
- PAFMPB
- DelPhi Web Server
- PBEQ-Solver
- ASKIT
- SDPBS
- FMMLIB3D
- PyGBe
- tabipb
- VCMM
- An \(O(N \log N)\) hierarchical random compression method for kernel matrices by sampling partial matrix entries
- A two-component matched interface and boundary (MIB) regularization for charge singularity in implicit solvation
- MLAPM
- VMD
- Apbsmem
- Algorithm 967
- SMPBS
- ESES
- ScalFMM
- STFMMLIB3D
- ReebHanTun
- Afivo
- A computational model of protein induced membrane morphology with geodesic curvature driven protein-membrane interface
- A treecode based on barycentric Hermite interpolation for electrostatic particle interactions
- Multi-core CPU or GPU-accelerated multiscale modeling for biomolecular complexes
- A kernel-independent treecode based on barycentric Lagrange interpolation
- RPYFMM
- QTFier
- Modeling and computation of heterogeneous implicit solvent and its applications for biomolecules
- On preconditioning the treecode-accelerated boundary integral (TABI) Poisson-Boltzmann solver
- DelPhi
- On developing stable finite element methods for pseudo-time simulation of biomolecular electrostatics
- An asymptotic preserving Maxwell solver resulting in the Darwin limit of electrodynamics
- Regularization methods for the Poisson-Boltzmann equation: comparison and accuracy recovery
- A boundary integral Poisson-Boltzmann solvers package for solvated bimolecular simulations
- Accurate p\(K_a\) computation using matched interface and boundary (MIB) method based Poisson-Boltzmann solver
- A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver
- An integral equation formulation of the \(N\)-body dielectric spheres problem. II: Complexity analysis
- nuSMPBIC
- Enriched gradient recovery for interface solutions of the Poisson-Boltzmann equation
- Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the \textsc{PyGBe} code
- An implicit boundary integral method for computing electric potential of macromolecules in solvent
- A new linear Poisson-Boltzmann equation and finite element solver by solution decomposition approach
- DASHMM Accelerated Adaptive Fast Multipole Poisson-Boltzmann Solver on Distributed Memory Architecture
- A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules
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