Multi-core CPU or GPU-accelerated multiscale modeling for biomolecular complexes
DOI10.2478/MLBMB-2013-0009zbMATH Open1276.92030OpenAlexW2001962164WikidataQ37382382 ScholiaQ37382382MaRDI QIDQ2863940FDOQ2863940
Authors: Tao Liao, Peter M. Kekenes-Huskey, Yuhui Cheng, Anushka Michailova, J. Andrew McCammon, Yong-jie Zhang, Andrew D. McCulloch, Michael Holst 
Publication date: 5 December 2013
Published in: Molecular Based Mathematical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.2478/mlbmb-2013-0009
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Cites Work
- 3D finite element meshing from imaging data
- A Fast and High Quality Multilevel Scheme for Partitioning Irregular Graphs
- Parallel adaptive finite element algorithms for solving the coupled electro-diffusion equations
- Fully implicit ADI schemes for solving the nonlinear Poisson-Boltzmann equation
- A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules
- A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver
- ``New-version-fast-multipole-method accelerated electrostatic calculations in biomolecular sys\-tems
- Biomolecular surface construction by PDE transform
- Relationship between tetrahedron shape measures
- Three-dimensional alpha shapes
- Resolving topology ambiguity for multiple-material domains
- High-order fractional partial differential equation transform for molecular surface construction
- Dynamic maintenance and visualization of molecular surfaces.
- Quality meshing of implicit solvation models of biomolecular structures
- An efficient and scalable parallel algorithm for out-of-core isosurface extraction and rendering
Cited In (4)
- Atom simplification and quality T-mesh generation for multi-resolution biomolecular surfaces
- A fast band-Krylov eigensolver for macromolecular functional motion simulation on multicore architectures and graphics processors
- Modelling of protein surface using parallel heterogeneous architectures
- Efficient and qualified mesh generation for Gaussian molecular surface using adaptive partition and piecewise polynomial approximation
Uses Software
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