Parallel Adaptive Finite Element Algorithms for Solving the Coupled Electro-diffusion Equations

DOI10.2478/mlbmb-2013-0005zbMath1276.35143MaRDI QIDQ2863927

Jie Cheng, Benzhuo Lu, Yan Xie, Linbo Zhang

Publication date: 5 December 2013

Published in: Computational and Mathematical Biophysics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.2478/mlbmb-2013-0005

zbMATH Keywords

parallel processing; adaptive finite element method; Poisson-Nernst-Planck equations; DIIS; slotboom variables; software package PHG

Mathematics Subject Classification ID

35Q92: PDEs in connection with biology, chemistry and other natural sciences

35Q70: PDEs in connection with mechanics of particles and systems of particles

Related Items

稳态Poisson-Nernst-Planck方程的后验误差估计, Gradient Recovery-Type a Posteriori Error Estimates for Steady-State Poisson-Nernst-Planck Equations, A local approximation of fundamental measure theory incorporated into three dimensional Poisson-Nernst-Planck equations to account for hard sphere repulsion among ions, Stabilized finite element methods to simulate the conductances of ion channels, Residual type a posteriori error estimates for the time-dependent Poisson-Nernst-Planck equations, A weak Galerkin finite element method for time-dependent Poisson-Nernst-Planck equations, Adaptive finite element approximation for steady-state Poisson-Nernst-Planck equations, Multi-core CPU or GPU-accelerated Multiscale Modeling for Biomolecular Complexes

Uses Software

• TetGen
• ParaView
• FEtk
• PHG
• TMSmesh
• TransforMesh

Cites Work

• Second-order Poisson-Nernst-Planck solver for ion transport
• An efficient, reliable and robust error estimator for elliptic problems in \(\mathbb R^3\)
• The adaptive immersed interface finite element method for elliptic and Maxwell interface problems
• Local adaptive mesh refinement for shock hydrodynamics
• Accurate evaluation of electrostatics for macromolecules in solution
• Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes. I: Finite element solutions
• Semiconductor Device Simulation
• Numerical Methods for Semiconductor Device Simulation
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