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swMATH14719MaRDI QIDQ26616FDOQ26616

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Described by source

• Efficient and qualified mesh generation for Gaussian molecular surface using adaptive partition and piecewise polynomial approximation

Cited In (21)

• Research on parallel finite element methods for the drift-diffusion model in semiconductor device simulations
• A super-Gaussian Poisson-Boltzmann model for electrostatic free energy calculation: smooth dielectric distribution for protein cavities and in both water and vacuum states
• Automated parallel and body-fitted mesh generation in finite element simulation of macromolecular systems
• Model reduction-based initialization methods for solving the Poisson-Nernst-Planck equations in three-dimensional ion channel simulations
• Efficient generation of membrane and solvent tetrahedral meshes for ion channel finite element calculation
• Progress in developing Poisson-Boltzmann equation solvers
• A local approximation of fundamental measure theory incorporated into three dimensional Poisson-Nernst-Planck equations to account for hard sphere repulsion among ions
• On preconditioning the treecode-accelerated boundary integral (TABI) Poisson-Boltzmann solver
• Planewave density interpolation methods for 3D Helmholtz boundary integral equations
• On developing stable finite element methods for pseudo-time simulation of biomolecular electrostatics
• Superconvergent gradient recovery for nonlinear Poisson-Nernst-Planck equations with applications to the ion channel problem
• Stabilized finite element methods to simulate the conductances of ion channels
• A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules
• Parallel higher-order boundary integral electrostatics computation on molecular surfaces with curved triangulation
• A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver
• An Effective Finite Element Iterative Solver for a Poisson--Nernst--Planck Ion Channel Model with Periodic Boundary Conditions
• Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy
• DASHMM Accelerated Adaptive Fast Multipole Poisson-Boltzmann Solver on Distributed Memory Architecture
• Geometric and electrostatic modeling using molecular rigidity functions
• Finite element modeling of biomolecular systems in ionic solution
• Parallel adaptive finite element algorithms for solving the coupled electro-diffusion equations

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