A second-order discretization of the nonlinear Poisson-Boltzmann equation over irregular geometries using non-graded adaptive Cartesian grids
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Cites work
- A partial differential equation approach to multidimensional extrapolation.
- A second order accurate level set method on non-graded adaptive Cartesian grids
- A supra-convergent finite difference scheme for the Poisson and heat equations on irregular domains and non-graded adaptive Cartesian grids
- A supra-convergent finite difference scheme for the variable coefficient Poisson equation on non-graded grids
- Geometric integration over irregular domains with application to level-set methods
- The electric potential of a macromolecule in a solvent: A fundamental approach
- Tree methods for moving interfaces
Cited in
(23)- A review of level-set methods and some recent applications
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- A sharp numerical method for the simulation of Stefan problems with convective effects
- Solving elliptic interface problems with jump conditions on Cartesian grids
- Regularization methods for the Poisson-Boltzmann equation: comparison and accuracy recovery
- A volume-preserving reference map method for the level set representation
- Computational modeling of protein conformational changes -- application to the opening SARS-CoV-2 spike
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- Fast and scalable algorithms for constructing solvent-excluded surfaces of large biomolecules
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- A level-set multigrid technique for nonlinear diffusion in the numerical simulation of marble degradation under chemical pollutants
- A Poisson-Boltzmann solver on irregular domains with Neumann or Robin boundary conditions on non-graded adaptive grid
- A kernel-free boundary integral method for the nonlinear Poisson-Boltzmann equation
- JAX-DIPS: neural bootstrapping of finite discretization methods and application to elliptic problems with discontinuities
- A non-parametric gradient-based shape optimization approach for solving inverse problems in directed self-assembly of block copolymers
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- A Voronoi interface approach to cell aggregate electropermeabilization
- A cell-centred finite volume method for the Poisson problem on non-graded quadtrees with second order accurate gradients
- A conservative discretization of the Poisson-Nernst-Planck equations on adaptive Cartesian grids
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