Computational mean-field modeling of confined active fluids

DOI10.1016/J.JCP.2019.07.040MaRDI QIDQ2222508zbMATH OpenOpenAlexWikidataFDO

Authors Maxime Theillard, David Saintillan

Publication date 27 January 2021

Published in Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jcp.2019.07.040

zbMATH Keywords

level setswimming microorganismsactive fluidscontinuum mean-field modelinghybrid finite difference and finite volume methodQuad-/Octree

Mathematics Subject Classification ID

Finite difference methods applied to problems in fluid mechanics (76M20) Suspensions (76T20) Finite volume methods applied to problems in fluid mechanics (76M12) Biopropulsion in water and in air (76Z10)

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Cites work

• A multigrid method on non-graded adaptive octree and quadtree Cartesian grids
• A partial differential equation approach to multidimensional extrapolation.
• A second order accurate level set method on non-graded adaptive Cartesian grids
• A second order accurate projection method for the incompressible Navier-Stokes equations on non-graded adaptive grids
• A second-order discretization of the nonlinear Poisson-Boltzmann equation over irregular geometries using non-graded adaptive Cartesian grids
• A second-order sharp numerical method for solving the linear elasticity equations on irregular domains and adaptive grids -- application to shape optimization
• A sharp computational method for the simulation of the solidification of binary alloys
• A stable projection method for the incompressible Navier-Stokes equations on arbitrary geometries and adaptive quad/octrees
• A supra-convergent finite difference scheme for the variable coefficient Poisson equation on non-graded grids
• An Adaptive, Finite Difference Solver for the Nonlinear Poisson-Boltzmann Equation with Applications to Biomolecular Computations
• Collective hydrodynamics of swimming microorganisms: living fluids
• Critical bacterial concentration for the onset of collective swimming
• Dynamics and structure of an apolar active suspension in an annulus
• Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations
• Geometric integration over irregular domains with application to level-set methods
• Instabilities, pattern formation, and mixing in active suspensions
• Level-set simulations of soluble surfactant driven flows
• Meso-scale turbulence in living fluids
• Phoretic Self-Propulsion
• Rheology of Active Fluids
• The dynamics of microtubule/motor-protein assemblies in biology and physics
• The motion of rigid particles in a shear flow at low Reynolds number
• Transition from turbulent to coherent flows in confined three-dimensional active fluids
• Transport of a dilute active suspension in pressure-driven channel flow

Cited in

(17)

• Projection method for the fluctuating hydrodynamics equations
• Pre-asymptotic dispersion of active particles through a vertical pipe: the origin of hydrodynamic focusing
• Numerical simulation for clustering and pattern formation in active colloids with mass-preserving characteristic finite element method
• HYBRID TWO SCALES MATHEMATICAL TOOLS FOR ACTIVE PARTICLES MODELLING COMPLEX SYSTEMS WITH LEARNING HIDING DYNAMICS
• Two-phase volume-averaged predictive theory of dilute ferrofluid spin-up flow in a rotating magnetic field
• Conservative finite volume method on deforming geometries: the case of protein aggregation in dividing yeast cells
• A fast Chebyshev method for the Bingham closure with application to active nematic suspensions
• A hybrid particle-mesh method for incompressible active polar viscous gels
• Development of smoothed particle hydrodynamics method for modeling active nematics
• Deriving hydrodynamic equations from dry active matter models in three dimensions
• Collective dynamics and rheology of confined phoretic suspensions
• Large-scale simulation of steady and time-dependent active suspensions with the force-coupling method
• Stable nodal projection method on octree grids
• A finite element method for simulating soft active non-shearable rods immersed in generalized Newtonian fluids
• MODELLING LIVING FLUIDS WITH THE SUBDIVISION INTO THE COMPONENTS IN TERMS OF PROBABILITY DISTRIBUTIONS
• A finite volume method for continuum limit equations of nonlocally interacting active chiral particles
• Solution Microstructure of Confined Fluids with Directional Interactions under the Influence of an External Field: Mean Field Considerations

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