Random phylogenies and the distribution of branching times

DOI10.1016/J.JTBI.2015.09.005zbMATH Open1343.92365OpenAlexW1616620983WikidataQ38586353 ScholiaQ38586353MaRDI QIDQ304579FDOQ304579

Authors: Emmanuel Paradis 

Publication date: 26 August 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://hal.umontpellier.fr/hal-01821944/file/Paradis_2015_JTB.pdf

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zbMATH Keywords

extinctiondiversityLTT plotspeciation

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of branching processes (60J85)

Cites Work

• Birth-death models and coalescent point processes: the shape and probability of reconstructed phylogenies
• Lineages-through-time plots of neutral models for speciation
• The generalized time variable reconstructed birth-death process
• On the Generalized "Birth-and-Death" Process
• Construction of Exact Simultaneous Confidence Bands for a Simple Linear Regression Model

Cited In (9)

• Detection of Adaptive Shifts on Phylogenies by using Shifted Stochastic Processes on a Tree
• Lineages-through-time plots of neutral models for speciation
• A phase transition for a random cluster model on phylogenetic trees.
• The Aldous chain on cladograms in the diffusion limit
• The probability distribution of the reconstructed phylogenetic tree with occurrence data
• On the Distribution of Lengths of Evolutionary Trees
• Probability distribution of tree age for the simple birth-death process, with applications to distributions of number of ancestral lineages and divergence times for pairs of taxa in a Yule tree
• Pruning the tree of life: \(k\)-core percolation as selection mechanism
• The number of evolutionary steps on random and minimum length trees for random evolutionary data

Uses Software

• R
• ape
• TreeSim

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