Design and analysis of infectious disease studies. Abstracts from the workshop held February 19--25, 2023
Collections of abstracts of lectures (00B05) Proceedings of conferences of miscellaneous specific interest (00B25) Trees (05C05) Distance in graphs (05C12) Small world graphs, complex networks (graph-theoretic aspects) (05C82) Dynamical systems involving maps of trees and graphs (37E25) Dynamical systems in biology (37N25) Proceedings, conferences, collections, etc. pertaining to statistics (62-06) Bayesian inference (62F15) Classification and discrimination; cluster analysis (statistical aspects) (62H30) Markov processes: estimation; hidden Markov models (62M05) Non-Markovian processes: estimation (62M09) Censored data models (62N01) Estimation in survival analysis and censored data (62N02) Applications of statistics to biology and medical sciences; meta analysis (62P10) Software, source code, etc. for problems pertaining to biology (92-04) Proceedings, conferences, collections, etc. pertaining to biology (92-06) Computational methods for problems pertaining to biology (92-08) Medical epidemiology (92C60) Protein sequences, DNA sequences (92D20) Epidemiology (92D30)
Summary: This was the sixth workshop on mathematical and statistical methods for the transmission of infectious diseases. Building on epidemiologic models which were the subject of earlier workshops, this workshop concentrated on disentangling who infected whom by analysing high-resolution genomic data of pathogens which are routinely collected during outbreaks. Following the trail of the small mutations which continuously occur in different places of pathogens' genomes, mathematical tools and computational algorithms were used to reconstruct transmission trees and contact networks. In the past three years these methods were developed and used particularly in the context of the SARS-Cov-2 (Covid-19) pandemic.
- Design and analysis of infectious disease studies. Abstracts from the workshop held February 18--24, 2018
- Design and analysis of infectious disease studies. Abstracts from the workshop held November 1st -- November 7th, 2009
- Reconstructing transmission trees for communicable diseases using densely sampled genetic data
- Construction of semi-Markov genetic-space-time SEIR models and inference
- Bayesian reconstruction of transmission trees from genetic sequences and uncertain infection times
- A simple influenza model with complicated dynamics
- An epidemic model with short-lived mixing groups
- Analysing the effect of test-and-trace strategy in an SIR epidemic model
- Can local particle filters beat the curse of dimensionality?
- Curse-of-dimensionality revisited: Collapse of the particle filter in very large scale systems
- Exact and approximate formulas for contact tracing on random trees
- scientific article; zbMATH DE number 3817476 (Why is no real title available?)
- scientific article; zbMATH DE number 3779155 (Why is no real title available?)
- Inference for dynamic and latent variable models via iterated perturbed Bayes maps
- Markov genealogy processes
- Optimal Intervention Strategies for Minimizing Total Incidence During an Epidemic
- Sampling-through-time in birth-death trees
- Stochastic population processes. Analysis, approximation, simulations.
- The coalescent
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