phangorn

MaRDI QIDQ20321swMATHCRANFDO

Authors Emmanuel Paradis, Leonardo de Oliveira Martins, Klaus Schliep, Alastair Potts, Iris Bardel-kahr

Last update 23 January 2023

Copyright license GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier 2.11.1

Official website http://cran.r-project.org/web/packages/phangorn/index.html

Source code repository https://github.com/cran/phangorn

Cited in

(67)

• TML
• LDM
• Consistency and convergence rate of phylogenetic inference via regularization
• Registering the evolutionary history in individual-based models of speciation
• On the Maximum Agreement Subtree Conjecture for Balanced Trees
• DADA2
• Modeling rate of adaptive trait evolution using Cox-Ingersoll-Ross process: an approximate Bayesian computation approach
• Bayesian-weighted triplet and quartet methods for species tree inference
• Uncertainty in Phylogenetic Tree Estimates
• Analysis of phylogenetics and evolution with R
• ape
• Clustal
• BEAST
• LASER
• SeqinR
• phytools
• rwty
• Rankcluster
• dendextend
• Prokka
• TreeSim
• stringdist
• TOPD/FMTS
• taxize
• DensiTree
• Partitionfinder
• Tracer
• treespace
• RecordLinkage
• qPR
• Treevo
• OUOUCIR
• MSCquartets
• TERA
• genBaRcode
• scistreer
• TreeDist
• windex
• DCLEAR
• hisse
• paleotree
• rapidphylo
• babette
• beastier
• nodeSub
• pirouette
• immunarch
• POMS
• dowser
• phyloregion
• liayson
• sketching
• Rphylip
• dispRity
• OUwie
• pcmabc
• microbial
• EnvNJ
• MonoPhy
• markophylo
• BSS
• recluster
• apex
• haplotypes
• STraTUS
• ips
• datelife

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