mvMORPH

MaRDI QIDQ31910swMATHCRANFDO

Authors Julien Clavel

Last update 9 December 2023

Copyright license GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier 1.1.7, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.0.5, 1.0.6, 1.0.7, 1.0.8, 1.0.9, 1.0, 1.1.0, 1.1.1, 1.1.2, 1.1.3, 1.1.4, 1.1.5, 1.1.6, 1.1.8, 1.1.9

Official website https://cran.r-project.org/web/packages/mvMORPH/index.html

Source code repository https://github.com/cran/mvMORPH

Description

Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees and time series. 'mvMORPH' also proposes high-dimensional multivariate comparative tools (linear models using Generalized Least Squares and multivariate tests) based on penalized likelihood. See Clavel et al. (2015) <doi:10.1111/2041-210X.12420>, Clavel et al. (2019) <doi:10.1093/sysbio/syy045>, and Clavel & Morlon (2020) <doi:10.1093/sysbio/syaa010>.

Cites work

• A Penalized Likelihood Framework for High-Dimensional Phylogenetic Comparative Methods and an Application to New-World Monkeys Brain Evolution
• Reliable Phylogenetic Regressions for Multivariate Comparative Data: Illustration with the MANOVA and Application to the Effect of Diet on Mandible Morphology in Phyllostomid Bats
• mv morph : an r package for fitting multivariate evolutionary models to morphometric data

Cited in

(12)

• Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
• Phylogenetic effective sample size
• phytools
• GEIGER
• diversitree
• PCMBase
• Rphylopars
• logKDE
• ratematrix
• SPLITT
• treeio
• Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts

This page was built for software: mvMORPH