A Dirichlet process mixture of hidden Markov models for protein structure prediction
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Publication:993267
DOI10.1214/09-AOAS296zbMath1194.62117arXiv1011.2065OpenAlexW3103426803WikidataQ30395528 ScholiaQ30395528MaRDI QIDQ993267
Ryan Day, Jerry W. Tsai, David B. Dahl, Marina Vannucci, Kristin P. Lennox
Publication date: 10 September 2010
Published in: The Annals of Applied Statistics (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1011.2065
Bayesian nonparametricsvon Mises distributiondensity estimationprotein structure predictiontorsion anglesdihedral angles
Density estimation (62G07) Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15) Biochemistry, molecular biology (92C40)
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Uses Software
Cites Work
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- Modelling Heterogeneity With and Without the Dirichlet Process
- Calculating posterior distributions and modal estimates in Markov mixture models
- Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems
- A Bayesian analysis of some nonparametric problems
- The Nested Dirichlet Process
- Hierarchical Dirichlet Processes
- A multivariate von mises distribution with applications to bioinformatics
- Probabilistic model for two dependent circular variables
- Bayesian Methods for Hidden Markov Models
- Bayesian Density Estimation and Inference Using Mixtures
- Bayes Factors
- Density Estimation for Protein Conformation Angles Using a Bivariate von Mises Distribution and Bayesian Nonparametrics
- Bayesian Density Regression
- Protein Bioinformatics and Mixtures of Bivariate von Mises Distributions for Angular Data
- An ANOVA Model for Dependent Random Measures
- Efficient MCMC Schemes for Robust Model Extensions Using Encompassing Dirichlet Process Mixture Models
- Bayesian Nonparametric Spatial Modeling With Dirichlet Process Mixing
- Order-Based Dependent Dirichlet Processes
- Hidden Markov Dirichlet process: modeling genetic inference in open ancestral space