Gene mapping via the ancestral recombination graph

DOI10.1006/TPBI.2002.1601MaRDI QIDQ849567zbMATH OpenOpenAlexWikidataFDO

Authors Fabrice Larribe, Sabin Lessard, Nicholas J. Schork

Publication date 31 October 2006

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://semanticscholar.org/paper/67b9b5edf4b178d94852d8d26c23b1299df4282e

zbMATH Keywords

importance samplinglinkage disequilibriumvariable population sizeancestral recombination graph (ARG)gene mappingrecursion probabilities

Mathematics Subject Classification ID

Monte Carlo methods (65C05) Applications of graph theory (05C90) Problems related to evolution (92D15)

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Cites work

• scientific article; zbMATH DE number 176645 (Why is no real title available?)
• scientific article; zbMATH DE number 1094270 (Why is no real title available?)
• scientific article; zbMATH DE number 1094276 (Why is no real title available?)
• Ancestral inference in population genetics
• Genealogical-tree probabilities in the infinitely-many-site model
• Inference from gene trees in a subdivided population
• Inference in Molecular Population Genetics
• Mersenne twister
• Monte Carlo inference methods in population genetics
• Neutral two-locus multiple allele models with recombination
• On the Lambert \(w\) function
• Simulating probability distributions in the coalescent
• The age of a mutation in a general coalescent tree
• The coalescent

Cited in

(11)

• Joint Bayesian estimation of mutation location and age using linkage disequilibrium
• On the Height and Length of the Ancestral Recombination Graph
• Topological linkage disequilibrium calculated from coalescent genealogies
• Ancestral recombination graphs under non-random ascertainment, with applications to gene mapping
• A Bayesian method for detecting and characterizing allelic heterogeneity and boosting signals in genome-wide association studies
• A composite-conditional-likelihood approach for gene mapping based on linkage disequilibrium in windows of marker loci
• Backward simulation of ancestors of sampled individuals
• A chronology of fine-scale gene mapping by linkage disequilibrium
• Efficient \textit{in silico} chromosomal representation of populations via indexing ancestral genomes
• Single-crossover recombination and ancestral recombination trees
• A coalescent dual process for a Wright-Fisher diffusion with recombination and its application to haplotype partitioning

Describes a project that uses

Uses Software

• MersenneTwister

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