The age of a mutation in a general coalescent tree

DOI10.1080/15326349808807471MaRDI QIDQ4385221zbMATH OpenOpenAlexWikidataFDO

Authors Simon Tavaré, Robert Griffiths

Publication date 25 May 1998

Published in Communications in Statistics. Stochastic Models (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1080/15326349808807471

zbMATH Keywords

population geneticsmutationscoalescent processage of mutationinfinitely-many-sites modelsample of DNA

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15) Applications of branching processes (60J85)

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Cited in

(53)

• Efficiently inferring the demographic history of many populations with allele count data
• Forward and backward evolutionary processes and allele frequency spectrum in a cancer cell population
• Conditional ancestral times and related properties of an extant mutant at a locus A given the number of segregating sites observed at a linked locus B
• Variances and covariances of linear summary statistics of segregating sites
• Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes
• An accurate approximation for the expected site frequency spectrum in a Galton-Watson process under an infinite sites mutation model
• Gene mapping via the ancestral recombination graph
• Random walk Green kernels in the neutral Moran model conditioned on survivors at a random time to origin
• Inference from gene trees in a subdivided population
• The Wright-Fisher site frequency spectrum as a perturbation of the coalescent's
• Single and simultaneous binary mergers in Wright-Fisher genealogies
• Ancestral inference from haplotypes and mutations
• An efficient algorithm for generating the internal branches of a Kingman coalescent
• Some properties of the conditioned reconstructed process with Bernoulli sampling
• Theory and applications of a deterministic approximation to the coalescent model
• The star-shaped \(\Lambda\)-coalescent and Fleming-Viot process
• Sparse moments of univariate step functions and allele frequency spectra
• An analytical framework in the general coalescent tree setting for analyzing polymorphisms created by two mutations
• Statistical inference for the evolutionary history of cancer genomes
• The genealogy, site frequency spectrum and ages of two nested mutant alleles
• Population genetics of neutral mutations in exponentially growing cancer cell populations
• Developments in coalescent theory from single loci to chromosomes
• A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms
• Rare alleles and selection.
• Correcting for ascertainment biases when analyzing SNP data: applications to the estimation of linkage disequilibrium
• The effect of recurrent mutation on the frequency spectrum of a segregating site and the age of an allele
• The ages of mutations in gene trees
• On the genealogy of a sample of neutral rare alleles.
• Site frequency spectra from genomic SNP surveys
• Non-equilibrium theory of the allele frequency spectrum
• Computing the joint distribution of the total tree length across loci in populations with variable size
• Times on trees, and the age of an allele
• Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory
• Genealogical properties of subsamples in highly fecund populations
• Allelic frequencies given the sample's common ancestral type
• Genetic drift in populations governed by a Galton-Watson branching process
• The allelic partition for coalescent point processes
• Descartes' rule of signs and the identifiability of population demographic models from genomic variation data
• Correction
• The joint allele frequency spectrum of multiple populations: a coalescent theory approach
• The site-frequency spectrum of linked sites
• Conditional genealogies and the age of a neutral mutant
• A note on distributions of times to coalescence, under time-dependent population size
• Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory
• An approximate sampling formula under genetic hitchhiking
• Within a sample from a population, the distribution of the number of descendants of a subsample's most recent common ancestor
• Coalescent lineage distributions
• The stationary distribution of a sample from the Wright-Fisher diffusion model with general small mutation rates
• The transition distribution of a sample from a Wright-Fisher diffusion with general small mutation rates
• The non-equilibrium allele frequency spectrum in a Poisson random field framework
• Ewens' sampling formula and related formulae: combinatorial proofs, extensions to variable population size and applications to ages of alleles
• The frequency spectrum of a mutation, and its age, in a general diffusion model
• Genealogical histories in structured populations

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