The age of a mutation in a general coalescent tree

DOI10.1080/15326349808807471zbMATH Open0889.92017OpenAlexW2146638375WikidataQ60307351 ScholiaQ60307351MaRDI QIDQ4385221FDOQ4385221

Authors: Simon Tavaré, Robert Griffiths 

Publication date: 25 May 1998

Published in: Communications in Statistics. Stochastic Models (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1080/15326349808807471

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zbMATH Keywords

population geneticsmutationscoalescent processage of mutationinfinitely-many-sites modelsample of DNA

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15) Applications of branching processes (60J85)

Cited In (53)

• Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory
• Forward and backward evolutionary processes and allele frequency spectrum in a cancer cell population
• Conditional ancestral times and related properties of an extant mutant at a locus A given the number of segregating sites observed at a linked locus B
• Variances and covariances of linear summary statistics of segregating sites
• Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes
• An accurate approximation for the expected site frequency spectrum in a Galton-Watson process under an infinite sites mutation model
• Random walk Green kernels in the neutral Moran model conditioned on survivors at a random time to origin
• Inference from gene trees in a subdivided population
• Gene mapping via the ancestral recombination graph
• The Wright-Fisher site frequency spectrum as a perturbation of the coalescent's
• Single and simultaneous binary mergers in Wright-Fisher genealogies
• Ancestral inference from haplotypes and mutations
• An efficient algorithm for generating the internal branches of a Kingman coalescent
• Some properties of the conditioned reconstructed process with Bernoulli sampling
• Theory and applications of a deterministic approximation to the coalescent model
• The star-shaped \(\Lambda\)-coalescent and Fleming-Viot process
• Sparse moments of univariate step functions and allele frequency spectra
• An analytical framework in the general coalescent tree setting for analyzing polymorphisms created by two mutations
• Statistical inference for the evolutionary history of cancer genomes
• The genealogy, site frequency spectrum and ages of two nested mutant alleles
• Population genetics of neutral mutations in exponentially growing cancer cell populations
• Developments in coalescent theory from single loci to chromosomes
• A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms
• Correcting for ascertainment biases when analyzing SNP data: applications to the estimation of linkage disequilibrium
• Rare alleles and selection.
• The ages of mutations in gene trees
• The effect of recurrent mutation on the frequency spectrum of a segregating site and the age of an allele
• On the genealogy of a sample of neutral rare alleles.
• Site frequency spectra from genomic SNP surveys
• Non-equilibrium theory of the allele frequency spectrum
• Computing the joint distribution of the total tree length across loci in populations with variable size
• Times on trees, and the age of an allele
• Genealogical properties of subsamples in highly fecund populations
• Correction
• Allelic frequencies given the sample's common ancestral type
• The allelic partition for coalescent point processes
• Genetic drift in populations governed by a Galton-Watson branching process
• Descartes' rule of signs and the identifiability of population demographic models from genomic variation data
• The joint allele frequency spectrum of multiple populations: a coalescent theory approach
• The site-frequency spectrum of linked sites
• Conditional genealogies and the age of a neutral mutant
• Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory
• A note on distributions of times to coalescence, under time-dependent population size
• Coalescent lineage distributions
• Within a sample from a population, the distribution of the number of descendants of a subsample's most recent common ancestor
• An approximate sampling formula under genetic hitchhiking
• The stationary distribution of a sample from the Wright-Fisher diffusion model with general small mutation rates
• The transition distribution of a sample from a Wright-Fisher diffusion with general small mutation rates
• The non-equilibrium allele frequency spectrum in a Poisson random field framework
• Ewens' sampling formula and related formulae: combinatorial proofs, extensions to variable population size and applications to ages of alleles
• The frequency spectrum of a mutation, and its age, in a general diffusion model
• Genealogical histories in structured populations
• Efficiently inferring the demographic history of many populations with allele count data

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