Importance sampling on coalescent histories. II: Subdivided population models

DOI10.1239/AAP/1086957580zbMATH Open1124.62317OpenAlexW2002715980MaRDI QIDQ4819490FDOQ4819490

Authors: Maria De Iorio, Robert Griffiths 

Publication date: 24 September 2004

Published in: Advances in Applied Probability (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1239/aap/1086957580

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zbMATH Keywords

importance samplingdiffusion processmigrationsubdivided populationcoalescent process

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Genetics and epigenetics (92D10)

Cites Work

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• The sampling theory of selectively neutral alleles
• The coalescent and genealogical process in geographically structured population
• Simulating probability distributions in the coalescent
• Ancestral inference in population genetics
• Monte Carlo inference methods in population genetics
• Title not available (Why is that?)
• Inference in Molecular Population Genetics
• Importance sampling on coalescent histories. I
• Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models
• Inference from gene trees in a subdivided population
• Coalescence time for two genes from a subdivided population
• Estimation in an island model using simulation
• The ages of mutations in gene trees

Cited In (32)

• Statistical tools for seed bank detection
• Inductive determination of allele frequency spectrum probabilities in structured populations
• Importance sampling and the two-locus model with subdivided population structure
• Inference from gene trees in a subdivided population
• A vectorized method of importance sampling with applications to models of mutation and migration
• Ancestral graph with bias in gene conversion
• Importance sampling on coalescent histories. I
• Inferring the demographic history from DNA sequences: an importance sampling approach based on non-homogeneous processes
• Full likelihood inference from the site frequency spectrum based on the optimal tree resolution
• Ascertainment correction for a population tree via a pruning algorithm for likelihood computation
• An efficient algorithm for generating the internal branches of a Kingman coalescent
• Computational inference beyond Kingman's coalescent
• The time machine: a simulation approach for stochastic trees
• Efficient computation in the IM model
• Sequential importance sampling for multiresolution Kingman-Tajima coalescent counting
• Coalescent simulation in continuous space: algorithms for large neighbourhood size
• Stopping-time resampling and population genetic inference under coalescent models
• Stationary distribution of a 2-island 2-allele wright-Fisher diffusion model with slow mutation and migration rates
• An approximate likelihood for genetic data under a model with recombination and population splitting
• Sequential Markov coalescent algorithms for population models with demographic structure
• A sequentially Markov conditional sampling distribution for structured populations with migration and recombination
• Genotype imputation in a coalescent model with infinitely-many-sites mutation
• Computing the joint distribution of the total tree length across loci in populations with variable size
• Bayesian parameter inference for partially observed stopped processes
• A note on the accuracy of PAC-likelihood inference with microsatellite data
• Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models
• Importance sampling for lambda-coalescents in the infinitely many sites model
• Slicing and dicing the genome: A statistical physics approach to population genetics
• Resampling: an improvement of importance sampling in varying population size models
• Allele frequency spectra in structured populations: novel-allele probabilities under the labelled coalescent
• Inference and rare event simulation for stopped Markov processes via reverse-time sequential Monte Carlo
• Efficiently inferring the demographic history of many populations with allele count data

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