The coalescent and genealogical process in geographically structured population

DOI10.1007/BF00173909MaRDI QIDQ803078zbMATH OpenWikidataFDO

Authors Morihiro Notohara

Publication date 1990

Published in Journal of Mathematical Biology (Search for Journal in Brave)

zbMATH Keywords

Kingman's coalescentisland modeldual process of the diffusion process of stepping-stone modelgenealogical processgeographically structured population modelmigration among coloniesspatial distribution of a common ancestor of sampled genessymmetric nearest-neighbour migrationtwo-population model

Mathematics Subject Classification ID

Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Genetics and epigenetics (92D10) Problems related to evolution (92D15) Continuous-time Markov processes on discrete state spaces (60J27)

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(77)

• Efficiently inferring the demographic history of many populations with allele count data
• Importance sampling on coalescent histories. II: Subdivided population models
• Statistical tools for seed bank detection
• Coalescence theory for a general class of structured populations with fast migration
• Evolutionary game dynamics in a finite continental island population model and emergence of cooperation
• Generalized stepping stone model with \(\Xi\)-resampling mechanism
• The seed bank coalescent with simultaneous switching
• Multitype \(\Lambda\)-coalescents
• On multi-type Cannings models and multi-type exchangeable coalescents
• Social evolution and genetic interactions in the short and long term
• Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes
• A spatio-temporal point process model for particle growth
• Convergence to the structured coalescent process
• Local fluctuations of genetic processes defined on two time scales, with applications to effective size estimation
• An ancestral process with selection in an ecological community
• A new general analytical approach for modeling patterns of genetic differentiation and effective size of subdivided populations over time
• Structured coalescent with nonconservative migration
• Inference from gene trees in a subdivided population
• Solving the migration-recombination equation from a genealogical point of view
• A simple method for computing exact probabilities of mutation numbers
• Demographic inference under the coalescent in a spatial continuum
• The distribution of the coalescence time and the number of pairwise nucleotide differences in a model of population divergence or speciation with an initial period of gene flow
• Rates of convergence in the two-island and isolation-with-migration models
• A new coalescent for seed-bank models
• Markov jump processes in estimating sharing of identity by descent
• Coalescent approximation for structured populations in a stationary random environment
• Spread of pedigree versus genetic ancestry in spatially distributed populations
• Diffusion processes and coalescent trees
• Separation of timescales for the seed bank diffusion and its jump-diffusion limit
• Coalescence in the recent past in rapidly growing populations
• An application of the central limit theorem to coalescence times in the structured coalescent model with strong migration
• The conditional ancestral selection graph with strong balancing selection
• Fixation probability for a beneficial allele and a mutant strategy in a linear game under weak selection in a finite island model
• Ordering in voter models on networks: exact reduction to a single-coordinate diffusion
• The propagation of a cultural or biological trait by neutral genetic drift in a subdivided population
• Coalescent simulation in continuous space: algorithms for large neighbourhood size
• Corridors for migration between large subdivided populations, and the structured coalescent
• Structured coalescent processes from a modified Moran model with large offspring numbers
• On spatial coalescents with multiple mergers in two dimensions
• The coalescence time of sampled genes in the structured coalescent model
• Recursions for the exchangeable partition function of the seedbank coalescent
• The coalescent in two colonies with symmetric migration
• A multi-dimensional coalescent process applied to multi-allelic selection models and migration models
• Coalescent processes in subdivided populations subject to recurrent mass extinctions
• On the eigenvalue effective size of structured populations
• The bounded coalescent model: conditioning a genealogy on a minimum root date
• Coalescence times andF_STvalues in subdivided populations with symmetric structure
• The transmission process: a combinatorial stochastic process for the evolution of transmission trees over networks
• One-dimensional stepping stone models, sardine genetics and Brownian local time
• Evolution in fluctuating populations
• Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models
• Inference of gene flow in the process of speciation: efficient maximum-likelihood implementation of a generalised isolation-with-migration model
• The many-demes limit for selection and drift in a subdivided population
• Evolution of coalescence times, genetic diversity and structure during colonization
• The coalescent in an island model of population subdivision with variation among demes.
• Coalescence in a random background.
• scientific article; zbMATH DE number 946709 (Why is no real title available?)
• Forty years of model-based phylogeography
• Evolutionary game dynamics in a finite asymmetric two-deme population and emergence of cooperation
• The mapping of epistatic effects onto a genealogical tree in haploid populations
• Genetic variability due to geographical inhomogeneity
• How to compute the effective size of spatiotemporally structured populations using separation of time scales
• Optimal point process filtering and estimation of the coalescent process
• Spatially inhomogeneous populations with seed-banks. II: clustering regime
• The strong-migration limit for the genealogical process in geographically structured populations
• Metapopulation inbreeding dynamics, effective size and subpopulation differentiation -- a general analytical approach for diploid organisms
• Segregating sites in Wright's island model
• The influence of partial panmixia on neutral models of spatial variation
• On the moments of the absorption time of Kingman's coalescent
• Exact moment calculations for genetic models with migration, mutation, and drift
• The effect of migration during the divergence
• Genealogical histories in structured populations
• The structured coalescent in the context of gene copy number variation
• The genealogical process of neutral genes with mutation in geographically structured populations
• Population structure and coalescence in pedigrees: comparisons to the structured coalescent and a framework for inference
• The Coalescent in Peripatric Metapopulations
• The structured coalescent process with weak migration

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