The coalescent and genealogical process in geographically structured population

DOI10.1007/BF00173909zbMATH Open0726.92014WikidataQ52505350 ScholiaQ52505350MaRDI QIDQ803078FDOQ803078

Authors: Morihiro Notohara 

Publication date: 1990

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

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zbMATH Keywords

Kingman's coalescentisland modeldual process of the diffusion process of stepping-stone modelgenealogical processgeographically structured population modelmigration among coloniesspatial distribution of a common ancestor of sampled genessymmetric nearest-neighbour migrationtwo-population model

Mathematics Subject Classification ID

Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Genetics and epigenetics (92D10) Problems related to evolution (92D15) Continuous-time Markov processes on discrete state spaces (60J27)

Cited In (77)

• Multitype \(\Lambda\)-coalescents
• Evolutionary game dynamics in a finite continental island population model and emergence of cooperation
• Generalized stepping stone model with \(\Xi\)-resampling mechanism
• On multi-type Cannings models and multi-type exchangeable coalescents
• A spatio-temporal point process model for particle growth
• Markov jump processes in estimating sharing of identity by descent
• Separation of timescales for the seed bank diffusion and its jump-diffusion limit
• The propagation of a cultural or biological trait by neutral genetic drift in a subdivided population
• The bounded coalescent model: conditioning a genealogy on a minimum root date
• Inference of gene flow in the process of speciation: efficient maximum-likelihood implementation of a generalised isolation-with-migration model
• Forty years of model-based phylogeography
• Spatially inhomogeneous populations with seed-banks. II: clustering regime
• The structured coalescent in the context of gene copy number variation
• Coalescence theory for a general class of structured populations with fast migration
• Statistical tools for seed bank detection
• The seed bank coalescent with simultaneous switching
• Social evolution and genetic interactions in the short and long term
• Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes
• Convergence to the structured coalescent process
• Local fluctuations of genetic processes defined on two time scales, with applications to effective size estimation
• An ancestral process with selection in an ecological community
• A new general analytical approach for modeling patterns of genetic differentiation and effective size of subdivided populations over time
• Inference from gene trees in a subdivided population
• Structured coalescent with nonconservative migration
• Solving the migration-recombination equation from a genealogical point of view
• A simple method for computing exact probabilities of mutation numbers
• Demographic inference under the coalescent in a spatial continuum
• The distribution of the coalescence time and the number of pairwise nucleotide differences in a model of population divergence or speciation with an initial period of gene flow
• Rates of convergence in the two-island and isolation-with-migration models
• A new coalescent for seed-bank models
• Coalescent approximation for structured populations in a stationary random environment
• Diffusion processes and coalescent trees
• Spread of pedigree versus genetic ancestry in spatially distributed populations
• Coalescence in the recent past in rapidly growing populations
• An application of the central limit theorem to coalescence times in the structured coalescent model with strong migration
• Ordering in voter models on networks: exact reduction to a single-coordinate diffusion
• The conditional ancestral selection graph with strong balancing selection
• Fixation probability for a beneficial allele and a mutant strategy in a linear game under weak selection in a finite island model
• Coalescent simulation in continuous space: algorithms for large neighbourhood size
• Corridors for migration between large subdivided populations, and the structured coalescent
• Structured coalescent processes from a modified Moran model with large offspring numbers
• On spatial coalescents with multiple mergers in two dimensions
• Recursions for the exchangeable partition function of the seedbank coalescent
• The coalescence time of sampled genes in the structured coalescent model
• The coalescent in two colonies with symmetric migration
• A multi-dimensional coalescent process applied to multi-allelic selection models and migration models
• Coalescence times andF_STvalues in subdivided populations with symmetric structure
• Coalescent processes in subdivided populations subject to recurrent mass extinctions
• On the eigenvalue effective size of structured populations
• The transmission process: a combinatorial stochastic process for the evolution of transmission trees over networks
• Evolution in fluctuating populations
• One-dimensional stepping stone models, sardine genetics and Brownian local time
• Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models
• The many-demes limit for selection and drift in a subdivided population
• Evolution of coalescence times, genetic diversity and structure during colonization
• The coalescent in an island model of population subdivision with variation among demes.
• Title not available (Why is that?)
• Coalescence in a random background.
• Evolutionary game dynamics in a finite asymmetric two-deme population and emergence of cooperation
• The mapping of epistatic effects onto a genealogical tree in haploid populations
• How to compute the effective size of spatiotemporally structured populations using separation of time scales
• Genetic variability due to geographical inhomogeneity
• Optimal point process filtering and estimation of the coalescent process
• The strong-migration limit for the genealogical process in geographically structured populations
• Metapopulation inbreeding dynamics, effective size and subpopulation differentiation -- a general analytical approach for diploid organisms
• Segregating sites in Wright's island model
• Exact moment calculations for genetic models with migration, mutation, and drift
• The influence of partial panmixia on neutral models of spatial variation
• On the moments of the absorption time of Kingman's coalescent
• The effect of migration during the divergence
• Genealogical histories in structured populations
• Efficiently inferring the demographic history of many populations with allele count data
• The Coalescent in Peripatric Metapopulations
• Importance sampling on coalescent histories. II: Subdivided population models
• The genealogical process of neutral genes with mutation in geographically structured populations
• The structured coalescent process with weak migration
• Population structure and coalescence in pedigrees: comparisons to the structured coalescent and a framework for inference

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