The sampling theory of selectively neutral alleles
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Publication:2555460
DOI10.1016/0040-5809(72)90035-4zbMath0245.92009OpenAlexW1967318355WikidataQ34216106 ScholiaQ34216106MaRDI QIDQ2555460
Publication date: 1972
Published in: Theoretical Population Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/0040-5809(72)90035-4
Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) General biology and biomathematics (92B05)
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Cites Work
