Genealogy of neutral genes in two partially isolated populations

DOI10.1016/0040-5809(90)90018-QMaRDI QIDQ752046zbMATH OpenOpenAlexWikidataFDO

Authors Naoyuki Takahata, Montgomery Slatkin

Publication date 1990

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/0040-5809(90)90018-q

zbMATH Keywords

coalescence timesDNA sequencesGene genealogyhaploid populationsneutral genesnucleotide differencespartially isolated populationsprobability of monophylysimulation

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

Recommendations

• The distribution of the coalescence time and the number of pairwise nucleotide differences in a model of population divergence or speciation with an initial period of gene flow
• Inference from gene trees in a subdivided population
• The coalescent in an island model of population subdivision with variation among demes.
• Multiple merger gene genealogies in two species: monophyly, paraphyly, and polyphyly for two examples of lambda coalescents
• The probability of reciprocal monophyly of gene lineages in three and four species

Cites work

• Estimating divergence times
• Exact sampling distributions from the infinite neutral alleles model
• Mathematical model for studying genetic variation in terms of restriction endonucleases.
• On the number of segregating sites in genetical models without recombination
• The coalescent
• The genetic divergence of two populations
• The sampling theory of selectively neutral alleles
• Theoretical foundation of population genetics at the molecular level

Cited in

(14)

• The genetic divergence of two populations
• Some statistical improvements for estimating population size and mutation rate from segregating sites in DNA sequences
• Evolution of coalescence times, genetic diversity and structure during colonization
• The probability of topological concordance of gene trees and species trees.
• Meng and Kubatko (2009): modeling hybridization with coalescence
• The distribution of the coalescence time and the number of pairwise nucleotide differences in a model of population divergence or speciation with an initial period of gene flow
• Multiple merger gene genealogies in two species: monophyly, paraphyly, and polyphyly for two examples of lambda coalescents
• The probability of reciprocal monophyly of gene lineages in three and four species
• The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species
• The effect of migration during the divergence
• Genealogical histories in structured populations
• Genealogies of two linked neutral loci after a selective sweep in a large population of stochastically varying size
• An efficient algorithm for generating the internal branches of a Kingman coalescent
• Theory and applications of a deterministic approximation to the coalescent model

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