Sufficiency of the number of segregating sites in the limit under finite-sites mutation

DOI10.1016/J.TPB.2010.05.003MaRDI QIDQ5890791zbMATH OpenOpenAlexWikidataFDO

Authors Arindam RoyChoudhury, John Wakeley

Publication date 22 June 2016

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tpb.2010.05.003

zbMATH Keywords

Ewens' sampling formulainfinitely-many-alleles modelinfinitely-many-sites modelmaximum likelihood estimatormutation parameternumber of segregating sitesPoisson random fieldsufficient statisticWatterson's estimator

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) General biostatistics (92B15) Genetics and epigenetics (92D10)

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Cites work

• A note on the sampling theory for infinite alleles and infinite sites models
• scientific article; zbMATH DE number 3255204 (Why is no real title available?)
• On the concept of the effective population size
• On the number of segregating sites in genetical models without recombination
• Properties of a neutral allele model with intragenic recombination
• The sampling theory of selectively neutral alleles
• The use of sample genealogies for studying a selectively neutral m-loci model with recombination

Cited in

(11)

• Segregating sites in a gene conversion model with mutation
• Some statistical improvements for estimating population size and mutation rate from segregating sites in DNA sequences
• Statistical properties of segregating sites
• Rate matrix estimation from site frequency data
• Variances and covariances of linear summary statistics of segregating sites
• The allele-frequency spectrum in a decoupled Moran model with mutation, drift, and directional selection, assuming small mutation rates
• Estimating the scaled mutation rate and mutation bias with site frequency data
• Inference of directional selection and mutation parameters assuming equilibrium
• Sufficiency of the number of segregating sites in the limit under finite-sites mutation
• A generalized Watterson estimator for next-generation sequencing: from trios to autopolyploids
• On the inadmissibility of Watterson's estimator

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