Bayesian pedigree inference with small numbers of single nucleotide polymorphisms via a factor-graph representation
DOI10.1016/J.TPB.2015.09.005zbMATH Open1343.92333OpenAlexW1744272320WikidataQ40450425 ScholiaQ40450425MaRDI QIDQ304447FDOQ304447
Authors: Eric C. Anderson, Thomas C. Ng 
Publication date: 25 August 2016
Published in: Theoretical Population Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.tpb.2015.09.005
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Cites Work
- LibDAI: a free and open source C++ library for discrete approximate inference in graphical models
- Title not available (Why is that?)
- Graphical models for genetic analyses
- Monte Carlo sampling methods using Markov chains and their applications
- Probabilistic graphical models.
- Title not available (Why is that?)
- The sampling theory of selectively neutral alleles
- Pólya-like urns and the Ewens' sampling formula
- Partition-distance: A problem and class of perfect graphs arising in clustering
- Efficient maximum likelihood pedigree reconstruction
- On the choice of prior density for the Bayesian analysis of pedigree structure
- Application of Maximum Likelihood Methods to Population Genetic Data for the Estimation of Individual Fertilities
- Factor graphs and the sum-product algorithm
- On the Application of Markov Chain Monte Carlo Methods to Genetic Analyses on Complex Pedigrees
- Improved maximum likelihood reconstruction of complex multi-generational pedigrees
- A simulated annealing algorithm for maximum likelihood pedigree reconstruction
Cited In (9)
- The 2018 Marcus W. Feldman prize in theoretical population biology
- An information theoretic approach to pedigree reconstruction
- Large-scale parentage inference with SNPs: an efficient algorithm for statistical confidence of parent pair allocations
- A graphical approach to relatedness inference
- Title not available (Why is that?)
- On the choice of prior density for the Bayesian analysis of pedigree structure
- Application of a graphical model in a real paternity case
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