Bayesian pedigree inference with small numbers of single nucleotide polymorphisms via a factor-graph representation

DOI10.1016/j.tpb.2015.09.005zbMath1343.92333WikidataQ40450425 ScholiaQ40450425MaRDI QIDQ304447

Eric C. Anderson, Thomas C. Ng

Publication date: 25 August 2016

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.tpb.2015.09.005

zbMATH Keywords

full-sibling reconstruction; multigeneration pedigree inference; relationship inference; sum-product algorithm

Mathematics Subject Classification ID

62P10: Applications of statistics to biology and medical sciences; meta analysis

62F15: Bayesian inference

92D15: Problems related to evolution

92D10: Genetics and epigenetics

Uses Software

• PLINK
• LibDAI
• Rcpp
• BayesDA
• FRANz

Cites Work

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• Factor graphs and the sum-product algorithm
• On the Application of Markov Chain Monte Carlo Methods to Genetic Analyses on Complex Pedigrees
• Monte Carlo sampling methods using Markov chains and their applications