Bayesian pedigree inference with small numbers of single nucleotide polymorphisms via a factor-graph representation

DOI10.1016/J.TPB.2015.09.005MaRDI QIDQ304447zbMATH OpenOpenAlexWikidataFDO

Authors Eric C. Anderson, Thomas C. Ng

Publication date 25 August 2016

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tpb.2015.09.005

zbMATH Keywords

full-sibling reconstructionmultigeneration pedigree inferencerelationship inferencesum-product algorithm

Mathematics Subject Classification ID

Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

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Cites work

• A simulated annealing algorithm for maximum likelihood pedigree reconstruction
• Application of Maximum Likelihood Methods to Population Genetic Data for the Estimation of Individual Fertilities
• Efficient maximum likelihood pedigree reconstruction
• Factor graphs and the sum-product algorithm
• Graphical models for genetic analyses
• scientific article; zbMATH DE number 997340 (Why is no real title available?)
• scientific article; zbMATH DE number 1911984 (Why is no real title available?)
• Improved maximum likelihood reconstruction of complex multi-generational pedigrees
• LibDAI: a free and open source C++ library for discrete approximate inference in graphical models
• Monte Carlo sampling methods using Markov chains and their applications
• On the Application of Markov Chain Monte Carlo Methods to Genetic Analyses on Complex Pedigrees
• On the choice of prior density for the Bayesian analysis of pedigree structure
• Partition-distance: A problem and class of perfect graphs arising in clustering
• Pólya-like urns and the Ewens' sampling formula
• Probabilistic graphical models.
• The sampling theory of selectively neutral alleles

Cited in

(9)

• The 2018 Marcus W. Feldman prize in theoretical population biology
• On the choice of prior density for the Bayesian analysis of pedigree structure
• An information theoretic approach to pedigree reconstruction
• Application of a graphical model in a real paternity case
• scientific article; zbMATH DE number 3991314 (Why is no real title available?)
• scientific article; zbMATH DE number 740419 (Why is no real title available?)
• scientific article; zbMATH DE number 1750194 (Why is no real title available?)
• Large-scale parentage inference with SNPs: an efficient algorithm for statistical confidence of parent pair allocations
• A graphical approach to relatedness inference

Describes a project that uses

Uses Software

• PLINK
• LibDAI
• Rcpp
• BayesDA
• FRANz

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