Ewens' sampling formula and related formulae: combinatorial proofs, extensions to variable population size and applications to ages of alleles

DOI10.1016/J.TPB.2005.02.004MaRDI QIDQ2489965zbMATH OpenOpenAlexWikidataFDO

Authors Sabin Lessard, Robert Griffiths

Publication date 28 April 2006

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tpb.2005.02.004

zbMATH Keywords

Age distribution of allelesCoalescent processEwens' sampling formulaGEM distributionInfinitely-many-alleles modelLadder indices and heightsPoisson-Dirichlet processUrn model

Mathematics Subject Classification ID

Combinatorial probability (60C05) Problems related to evolution (92D15)

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Cites work

• A countable representation of the Fleming-Viot measure-valued diffusion
• Addendum to a paper of W. Ewens
• Conditional genealogies and the age of a neutral mutant
• Cycles, permutations and the stucture of the Yule process with immigration
• scientific article; zbMATH DE number 4185447 (Why is no real title available?)
• Line-of-descent and genealogical processes, and their applications in population genetics models
• Lines of descent and the coalescent
• Lines of descent in the diffusion approximation of neutral Wright-Fisher models
• Logarithmic combinatorial structures: A probabilistic approach
• On the genealogy of a sample of neutral rare alleles.
• Partition structures, Polya urns, the Ewens sampling formula, and the ages of alleles
• Pólya-like urns and the Ewens' sampling formula
• Random discrete distributions invariant under size-biased permutation
• Random partitions in population genetics
• Rare alleles and selection.
• The age of a mutation in a general coalescent tree
• The ages of alleles and a coalescent
• The coalescent
• The frequency spectrum of a mutation, and its age, in a general diffusion model
• The infinitely-many-neutral-alleles diffusion model
• The latent roots of certain Markov chains arising in genetics: A new approach, I. Haploid models
• The population genealogy of the infinitely-many neutral alleles model
• The sampling theory of selectively neutral alleles
• Times on trees, and the age of an allele

Cited in

(31)

• Partition structures, Polya urns, the Ewens sampling formula, and the ages of alleles
• On Poisson approximations for the Ewens sampling formula when the mutation parameter grows with the sample size
• Single and simultaneous binary mergers in Wright-Fisher genealogies
• Invariant expectation values in the sampling of discrete frequency distributions
• Approximate Ewens formulae for symmetric overdominance selection
• Allele frequency spectra in structured populations: novel-allele probabilities under the labelled coalescent
• Inductive determination of allele frequency spectrum probabilities in structured populations
• Convergence time to the Ewens sampling formula in the infinite alleles Moran model
• Sampling formulae for symmetric selection
• A conjugate class of random probability measures based on tilting and with its posterior analysis
• Beta-coalescents and continuous stable random trees
• Neutral community theory: How stochasticity and dispersal-limitation can explain species coexistence
• Average abundancy of cooperation in multi-player games with random payoffs
• Random permutations and the Ewens sampling formula in genetics
• Approximate sampling formulae for general finite-alleles models of mutation
• scientific article; zbMATH DE number 3936988 (Why is no real title available?)
• Recurrence equations for the probability distribution of sample configurations in exact population genetics models
• Coalescent lineage distributions
• The distribution of the frequencies of age-ordered alleles in a diffusion model
• Generalized Poisson--Dirichlet Distributions Based on the Dickman Subordinator
• A reconstruction of Ewens' sampling formula via lists of coins
• Site frequency spectra from genomic SNP surveys
• Shannon information entropy, soliton clusters and Bose-Einstein condensation in log gravity
• The magical Ewens sampling formula
• A refinement of the Ewens sampling formula
• The distribution of the number of mutations in the genealogy of a sample from a single population
• Ancestral inference from haplotypes and mutations
• Diffusion approximations for one-locus multi-allele kin selection, mutation and random drift in group-structured populations: a unifying approach to selection models in population genetics
• On sampling distributions for coalescent processes with simultaneous multiple collisions
• Bayesian nonparametric estimators derived from conditional Gibbs structures
• An asymptotic sampling formula for the coalescent with recombination

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