The probability distribution of ranked gene trees on a species tree

DOI10.1016/J.MBS.2011.10.006zbMATH Open1241.92055OpenAlexW1993168296WikidataQ51500447 ScholiaQ51500447MaRDI QIDQ433674FDOQ433674

Authors: James H. Degnan, Noah A. Rosenberg, Tanja Stadler 

Publication date: 5 July 2012

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.mbs.2011.10.006

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zbMATH Keywords

coalescentphylogeneticspopulation geneticsanomalous gene treesgenealogies

Mathematics Subject Classification ID

Applications of graph theory (05C90) Problems related to evolution (92D15) Trees (05C05) Random graphs (graph-theoretic aspects) (05C80) Probabilistic models, generic numerical methods in probability and statistics (65C20)

Cites Work

• Title not available (Why is that?)
• The probability of topological concordance of gene trees and species trees.
• Coalescent histories for discordant gene trees and species trees
• Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
• Enumeration via ballot numbers
• Line-of-descent and genealogical processes, and their applications in population genetics models
• Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: a model
• Maximum tree: a consistent estimator of the species tree

Cited In (11)

• Effects of discordance between species and gene trees on phylogenetic diversity conservation
• Enumeration of lonely pairs of gene trees and species trees by means of antipodal cherries
• Enumeration of compact coalescent histories for matching gene trees and species trees
• The distributions under two species-tree models of the number of root ancestral configurations for matching gene trees and species trees
• Computing the probability of gene trees concordant with the species tree in the multispecies coalescent
• Roadblocked monotonic paths and the enumeration of coalescent histories for non-matching caterpillar gene trees and species trees
• The probability distribution of the reconstructed phylogenetic tree with occurrence data
• A lattice structure for ancestral configurations arising from the relationship between gene trees and species trees
• On the Distribution of Lengths of Evolutionary Trees
• On the unranked topology of maximally probable ranked gene tree topologies
• The probability of topological concordance of gene trees and species trees.

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• BUCKy

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