| Publication | Date of Publication | Type |
|---|
The probability distribution of the ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data
Journal of Theoretical Biology | 2021-02-11 | Paper |
Erratum to ``On the statistical analysis of single cell lineage trees
Journal of Theoretical Biology | 2021-01-13 | Paper |
| Practical considerations for measuring the effective reproductive number, Rt | 2020-06-21 | Paper |
The probability distribution of the reconstructed phylogenetic tree with occurrence data
Journal of Theoretical Biology | 2020-02-11 | Paper |
Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts
Theoretical Population Biology | 2020-02-01 | Paper |
Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts
Theoretical Population Biology | 2020-01-23 | Paper |
Phylogenetic analysis accounting for age-dependent death and sampling with applications to epidemics
Journal of Theoretical Biology | 2019-05-15 | Paper |
Sampling-through-time in birth-death trees
Journal of Theoretical Biology | 2019-03-26 | Paper |
Parallel likelihood calculation for phylogenetic comparative models: The SPLITT C++ library
Methods in Ecology and Evolution | 2019-01-08 | Paper |
On incomplete sampling under birth-death models and connections to the sampling-based coalescent
Journal of Theoretical Biology | 2018-12-11 | Paper |
Fast likelihood evaluation for multivariate phylogenetic comparative methods: the PCMBase R package
(available as arXiv preprint) | 2018-09-24 | Paper |
Detection of HIV transmission clusters from phylogenetic trees using a multi-state birth–death model
Journal of The Royal Society Interface | 2018-09-01 | Paper |
The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes
Journal of Theoretical Biology | 2018-06-15 | Paper |
On the statistical analysis of single cell lineage trees
Journal of Theoretical Biology | 2018-05-24 | Paper |
A Practical Guide to Estimating the Heritability of Pathogen Traits
Molecular Biology and Evolution | 2018-01-09 | Paper |
Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models
Journal of Theoretical Biology | 2016-05-19 | Paper |
Finding the best resolution for the Kingman-Tajima coalescent: theory and applications
Journal of Mathematical Biology | 2015-04-14 | Paper |
Birth-death models and coalescent point processes: the shape and probability of reconstructed phylogenies
Theoretical Population Biology | 2015-01-20 | Paper |
| Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model | 2013-08-23 | Paper |
The probability distribution of ranked gene trees on a species tree
Mathematical Biosciences | 2012-07-05 | Paper |
Analyzing and reconstructing reticulation networks under timing constraints
Journal of Mathematical Biology | 2010-11-11 | Paper |
Lineages-through-time plots of neutral models for speciation
Mathematical Biosciences | 2009-02-05 | Paper |
