Some mathematical models from population genetics. École d'Été de Probabilités de Saint-Flour XXXIX-2009

DOI10.1007/978-3-642-16632-7MaRDI QIDQ608136zbMATH OpenOpenAlexWikidataFDO

Authors Alison Etheridge

Publication date 25 November 2010

Published in Lecture Notes in Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-642-16632-7

zbMATH Keywords

Wright-Fisher modelLambda-Fleming-Viot process

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Genetics and epigenetics (92D10) Problems related to evolution (92D15) Population dynamics (general) (92D25) Introductory exposition (textbooks, tutorial papers, etc.) pertaining to biology (92-01)

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Cited in

(78)

• On the spectrum and ergodicity of a neutral multi-allelic Moran model
• A short review on boundary behavior of linear diffusion processes
• Takeover, fixation and identifiability in finite neutral genealogy models
• On multi-type Cannings models and multi-type exchangeable coalescents
• Costly defense traits in structured populations
• Trees within trees. II: Nested fragmentations
• Filtering coupled Wright-Fisher diffusions
• Dormancy in stochastic population models
• The stepping stone model in a random environment and the effect of local heterogeneities on isolation by distance patterns
• The Moran forest
• Analysis of diversity-dependent species evolution using concepts in population genetics
• The evolving Moran genealogy
• Quantitative approximation of the discrete Moran process by a Wright-Fisher diffusion
• Simulation from quasi-stationary distributions on reducible state spaces
• Diffusive limits of Lipschitz functionals of Poisson measures
• Nonparametric estimation of the diffusion coefficient from i.i.d. S.D.E. paths
• Approximate filtering via discrete dual processes
• Duality for a boundary driven asymmetric model of energy transport
• Uniform in time propagation of chaos for a Moran model
• Chromosome painting: how recombination mixes ancestral colors
• Hitting times and interlacing eigenvalues: a stochastic approach using intertwinings
• Lines of descent in the deterministic mutation-selection model with pairwise interaction
• A simple probabilistic approach of the yard-sale model
• The seed bank coalescent with simultaneous switching
• The Wright-Fisher model with efficiency
• An approximate stationary solution for multi-allele neutral diffusion with low mutation rates
• General selection models: Bernstein duality and minimal ancestral structures
• Effects of population- and seed bank size fluctuations on neutral evolution and efficacy of natural selection
• Asymptotic behaviour of sampling and transition probabilities in coalescent models under selection and parent dependent mutations
• A new coalescent for seed-bank models
• Rate matrix estimation from site frequency data
• Clustering dynamics in a class of normalised generalised gamma dependent priors
• The symmetric coalescent and Wright-Fisher models with bottlenecks
• On the stationary distribution of the block counting process for population models with mutation and selection
• Propagation of chaos: a review of models, methods and applications. II: Applications
• Stationary distribution of a 2-island 2-allele wright-Fisher diffusion model with slow mutation and migration rates
• The segregated \(\Lambda\)-coalescent
• Multilevel mutation-selection systems and set-valued duals
• Bayesian inference of selection in the Wright-Fisher diffusion model
• Probability measure-valued polynomial diffusions
• Genealogies in simple models of evolution
• Large scale behaviour of the spatial \(\varLambda\)-Fleming-Viot process
• Looking down in the ancestral selection graph: a probabilistic approach to the common ancestor type distribution
• Trees within trees: simple nested coalescents
• Statistical tools for seed bank detection
• Gradient flow formulations of discrete and continuous evolutionary models: a unifying perspective
• Progress in population genetics and human evolution. Proceedings of the workshop on Mathematical population genetics, held at the IMA, Minnesota, MN, USA, January 24--28, 1994
• The \(\lambda\)-Fleming-Viot process and a connection with Wright-Fisher diffusion
• Multivariate phase-type theory for the site frequency spectrum
• A Wright-Fisher model with indirect selection
• Spatial population models
• The frequency-dependent Wright-Fisher model: diffusive and non-diffusive approximations
• Cooperation, conformity, and the coevolutionary problem of trait associations
• A discrete Markov metapopulation model for persistence and extinction of species
• Common ancestor type distribution: a Moran model and its deterministic limit
• On the notion(s) of duality for Markov processes
• A conversation with Don Dawson
• Collective proposal distributions for nonlinear MCMC samplers: mean-field theory and fast implementation
• The sequential loss of allelic diversity
• Rate of coalescence of lineage pairs in the spatial \(\varLambda\)-Fleming-Viot process
• Kingman's coalescent with erosion
• Kolmogorov's law of the iterated logarithm for noncommutative martingales
• Some support properties for a class of \(\varLambda\)-Fleming-Viot processes
• The Moran model with selection: fixation probabilities, ancestral lines, and an alternative particle representation
• A general framework for moment-based analysis of genetic data
• Diffusion approximation for an age-class-structured population under viability and fertility selection with application to fixation probability of an advantageous mutant
• Evolution in fluctuating populations
• Genealogical properties of subsamples in highly fecund populations
• The split-and-drift random graph, a null model for speciation
• Numerical approximation of irregular SDEs via Skorokhod embeddings
• Finding the best resolution for the Kingman-Tajima coalescent: theory and applications
• Modelling evolution in a spatial continuum
• Rescaling limits of the spatial Lambda-Fleming-Viot process with selection
• Existence of probability measure valued jump-diffusions in generalized Wasserstein spaces
• Dualities in population genetics: a fresh look with new dualities
• The stationary distribution of a sample from the Wright-Fisher diffusion model with general small mutation rates
• Quantitative results for the Fleming-Viot particle system and quasi-stationary distributions in discrete space
• On the boundary classification of \(\Lambda\)-Wright-Fisher processes with frequency-dependent selection

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