Some mathematical models from population genetics. École d'Été de Probabilités de Saint-Flour XXXIX-2009

DOI10.1007/978-3-642-16632-7zbMATH Open1320.92003OpenAlexW575829923WikidataQ60500167 ScholiaQ60500167MaRDI QIDQ608136FDOQ608136

Alison Etheridge

Publication date: 25 November 2010

Published in: Lecture Notes in Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-642-16632-7

zbMATH Keywords

Wright-Fisher modelLambda-Fleming-Viot process

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Genetics and epigenetics (92D10) Problems related to evolution (92D15) Population dynamics (general) (92D25) Introductory exposition (textbooks, tutorial papers, etc.) pertaining to biology (92-01)

Cited In (76)

• Genealogies in simple models of evolution
• Statistical tools for seed bank detection
• Finding the best resolution for the Kingman-Tajima coalescent: theory and applications
• Modelling evolution in a spatial continuum
• Collective proposal distributions for nonlinear MCMC samplers: mean-field theory and fast implementation
• The seed bank coalescent with simultaneous switching
• Trees within trees: simple nested coalescents
• A simple probabilistic approach of the yard-sale model
• Effects of population- and seed bank size fluctuations on neutral evolution and efficacy of natural selection
• A general framework for moment-based analysis of genetic data
• The split-and-drift random graph, a null model for speciation
• The symmetric coalescent and Wright-Fisher models with bottlenecks
• Large scale behaviour of the spatial \(\varLambda\)-Fleming-Viot process
• The sequential loss of allelic diversity
• Kingman's coalescent with erosion
• Rescaling limits of the spatial Lambda-Fleming-Viot process with selection
• The Λ-Fleming-Viot Process and a Connection with Wright-Fisher Diffusion
• Diffusion approximation for an age-class-structured population under viability and fertility selection with application to fixation probability of an advantageous mutant
• The frequency-dependent Wright-Fisher model: diffusive and non-diffusive approximations
• Numerical approximation of irregular SDEs via Skorokhod embeddings
• A new coalescent for seed-bank models
• An approximate stationary solution for multi-allele neutral diffusion with low mutation rates
• Rate matrix estimation from site frequency data
• Looking down in the ancestral selection graph: a probabilistic approach to the common ancestor type distribution
• Gradient flow formulations of discrete and continuous evolutionary models: a unifying perspective
• Cooperation, conformity, and the coevolutionary problem of trait associations
• A discrete Markov metapopulation model for persistence and extinction of species
• Rate of coalescence of lineage pairs in the spatial \(\varLambda\)-Fleming-Viot process
• On the stationary distribution of the block counting process for population models with mutation and selection
• Stationary distribution of a 2-island 2-allele wright-Fisher diffusion model with slow mutation and migration rates
• Probability measure-valued polynomial diffusions
• Chromosome painting: how recombination mixes ancestral colors
• The segregated \(\Lambda\)-coalescent
• A Wright-Fisher model with indirect selection
• Hitting times and interlacing eigenvalues: a stochastic approach using intertwinings
• Genealogical properties of subsamples in highly fecund populations
• Common ancestor type distribution: a Moran model and its deterministic limit
• A conversation with Don Dawson
• On the boundary classification of \(\Lambda\)-Wright-Fisher processes with frequency-dependent selection
• The Moran model with selection: fixation probabilities, ancestral lines, and an alternative particle representation
• Lines of descent in the deterministic mutation-selection model with pairwise interaction
• Bayesian inference of selection in the Wright-Fisher diffusion model
• Dualities in population genetics: a fresh look with new dualities
• Trees within trees. II: Nested fragmentations
• Asymptotic behaviour of sampling and transition probabilities in coalescent models under selection and parent dependent mutations
• Multilevel mutation-selection systems and set-valued duals
• On the notion(s) of duality for Markov processes
• Kolmogorov's law of the iterated logarithm for noncommutative martingales
• Some support properties for a class of \(\varLambda\)-Fleming-Viot processes
• The stationary distribution of a sample from the Wright-Fisher diffusion model with general small mutation rates
• Clustering dynamics in a class of normalised generalised gamma dependent priors
• General selection models: Bernstein duality and minimal ancestral structures
• Propagation of chaos: a review of models, methods and applications. II: Applications
• Multivariate phase-type theory for the site frequency spectrum
• Existence of probability measure valued jump-diffusions in generalized Wasserstein spaces
• Quantitative results for the Fleming-Viot particle system and quasi-stationary distributions in discrete space
• Uniform in time propagation of chaos for a Moran model
• The Wright-Fisher model with efficiency
• Progress in population genetics and human evolution. Proceedings of the workshop on Mathematical population genetics, held at the IMA, Minnesota, MN, USA, January 24--28, 1994
• Title not available (Why is that?)
• On multi-type Cannings models and multi-type exchangeable coalescents
• The evolving Moran genealogy
• Costly defense traits in structured populations
• Approximate filtering via discrete dual processes
• Duality for a boundary driven asymmetric model of energy transport
• The Moran forest
• Nonparametric estimation of the diffusion coefficient from i.i.d. S.D.E. paths
• Filtering coupled Wright-Fisher diffusions
• Dormancy in stochastic population models
• Takeover, fixation and identifiability in finite neutral genealogy models
• Quantitative approximation of the discrete Moran process by a Wright-Fisher diffusion
• Analysis of diversity-dependent species evolution using concepts in population genetics
• The stepping stone model in a random environment and the effect of local heterogeneities on isolation by distance patterns
• Title not available (Why is that?)
• Simulation from quasi-stationary distributions on reducible state spaces
• Diffusive limits of Lipschitz functionals of Poisson measures

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