Some mathematical models from population genetics. École d'Été de Probabilités de Saint-Flour XXXIX-2009

DOI10.1007/978-3-642-16632-7MaRDI QIDQ608136zbMATH OpenOpenAlexWikidataFDO

Authors Alison Etheridge

Publication date 25 November 2010

Published in Lecture Notes in Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-642-16632-7

zbMATH Keywords

Wright-Fisher modelLambda-Fleming-Viot process

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Genetics and epigenetics (92D10) Problems related to evolution (92D15) Population dynamics (general) (92D25) Introductory exposition (textbooks, tutorial papers, etc.) pertaining to biology (92-01)

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Cited in

(93)

• Statistical tools for seed bank detection
• Diffusive limits of Lipschitz functionals of Poisson measures
• Genealogies in simple models of evolution
• Finding the best resolution for the Kingman-Tajima coalescent: theory and applications
• Modelling evolution in a spatial continuum
• Collective proposal distributions for nonlinear MCMC samplers: mean-field theory and fast implementation
• The seed bank coalescent with simultaneous switching
• On multi-type Cannings models and multi-type exchangeable coalescents
• Trees within trees: simple nested coalescents
• A simple probabilistic approach of the yard-sale model
• Effects of population- and seed bank size fluctuations on neutral evolution and efficacy of natural selection
• A general framework for moment-based analysis of genetic data
• The split-and-drift random graph, a null model for speciation
• The ancestral selection graph for a -asymmetric Moran model
• Phase-type distributions in mathematical population genetics: an emerging framework
• Mathematical properties of the agent-based model of extinction -- recolonization for population genetics
• The symmetric coalescent and Wright-Fisher models with bottlenecks
• Large scale behaviour of the spatial \(\varLambda\)-Fleming-Viot process
• The evolving Moran genealogy
• Kingman's coalescent with erosion
• Rescaling limits of the spatial Lambda-Fleming-Viot process with selection
• The sequential loss of allelic diversity
• Diffusion approximation for an age-class-structured population under viability and fertility selection with application to fixation probability of an advantageous mutant
• Correlation of coalescence times in a diploid Wright-Fisher model with recombination and selfing
• The frequency-dependent Wright-Fisher model: diffusive and non-diffusive approximations
• Numerical approximation of irregular SDEs via Skorokhod embeddings
• A new coalescent for seed-bank models
• The -Fleming-Viot process and a connection with Wright-Fisher diffusion
• Costly defense traits in structured populations
• Unbiased likelihood estimation of wright-Fisher diffusion processes
• On the spectrum and ergodicity of a neutral multi-allelic Moran model
• An approximate stationary solution for multi-allele neutral diffusion with low mutation rates
• Rate matrix estimation from site frequency data
• Cooperation, conformity, and the coevolutionary problem of trait associations
• A discrete Markov metapopulation model for persistence and extinction of species
• Gradient flow formulations of discrete and continuous evolutionary models: a unifying perspective
• Looking down in the ancestral selection graph: a probabilistic approach to the common ancestor type distribution
• A short review on boundary behavior of linear diffusion processes
• Rate of coalescence of lineage pairs in the spatial \(\varLambda\)-Fleming-Viot process
• Spatial population models
• Stationary distribution of a 2-island 2-allele wright-Fisher diffusion model with slow mutation and migration rates
• On the stationary distribution of the block counting process for population models with mutation and selection
• Probability measure-valued polynomial diffusions
• Chromosome painting: how recombination mixes ancestral colors
• A Wright-Fisher model with indirect selection
• The segregated \(\Lambda\)-coalescent
• Approximate filtering via discrete dual processes
• Duality for a boundary driven asymmetric model of energy transport
• Hitting times and interlacing eigenvalues: a stochastic approach using intertwinings
• The Moran forest
• Genealogical properties of subsamples in highly fecund populations
• Evolution in fluctuating populations
• Common ancestor type distribution: a Moran model and its deterministic limit
• Nonparametric estimation of the diffusion coefficient from i.i.d. S.D.E. paths
• A conversation with Don Dawson
• The Moran model with selection: fixation probabilities, ancestral lines, and an alternative particle representation
• On the boundary classification of \(\Lambda\)-Wright-Fisher processes with frequency-dependent selection
• Lines of descent in the deterministic mutation-selection model with pairwise interaction
• Bayesian inference of selection in the Wright-Fisher diffusion model
• Dualities in population genetics: a fresh look with new dualities
• Filtering coupled Wright-Fisher diffusions
• Dormancy in stochastic population models
• Trees within trees. II: Nested fragmentations
• A two-size Wright-Fisher model: asymptotic analysis via uniform renewal theory
• Takeover, fixation and identifiability in finite neutral genealogy models
• Asymptotic behaviour of sampling and transition probabilities in coalescent models under selection and parent dependent mutations
• Multilevel mutation-selection systems and set-valued duals
• On the notion(s) of duality for Markov processes
• Kolmogorov's law of the iterated logarithm for noncommutative martingales
• Some support properties for a class of \(\varLambda\)-Fleming-Viot processes
• The stationary distribution of a sample from the Wright-Fisher diffusion model with general small mutation rates
• Clustering dynamics in a class of normalised generalised gamma dependent priors
• Binary branching processes with Moran type interactions
• Quantitative approximation of the discrete Moran process by a Wright-Fisher diffusion
• General selection models: Bernstein duality and minimal ancestral structures
• Calculating infinitesimal generators
• Excursion theory for the Wright-Fisher diffusion
• Analysis of diversity-dependent species evolution using concepts in population genetics
• Ancestral lineages for a branching annihilating random walk
• Propagation of chaos: a review of models, methods and applications. II: Applications
• Multivariate phase-type theory for the site frequency spectrum
• The stepping stone model in a random environment and the effect of local heterogeneities on isolation by distance patterns
• Existence of probability measure valued jump-diffusions in generalized Wasserstein spaces
• Convergence of population processes with small and frequent mutations to the canonical equation of adaptive dynamics
• Fractal opinions among interacting agents
• A Wright-Fisher graph model and the impact of directional selection on genetic variation
• The mutation process on the ancestral line under selection
• Quantitative results for the Fleming-Viot particle system and quasi-stationary distributions in discrete space
• Latent mutations in the ancestries of alleles under selection
• Uniform in time propagation of chaos for a Moran model
• The Wright-Fisher model with efficiency
• Progress in population genetics and human evolution. Proceedings of the workshop on Mathematical population genetics, held at the IMA, Minnesota, MN, USA, January 24--28, 1994
• Simulation from quasi-stationary distributions on reducible state spaces

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