Trees within trees: simple nested coalescents

DOI10.1214/18-EJP219MaRDI QIDQ1990228zbMATH OpenFDO

Authors Airam Blancas, Jean-Jil Duchamps, Amaury Lambert, Arno Siri-Jégousse

Publication date 25 October 2018

Published in Electronic Journal of Probability (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1803.02133, https://projecteuclid.org/euclid.ejp/1537257886

zbMATH Keywords

phylogeneticspopulation geneticspartitionevolutionrandom treeexchangeablespecies treecoming down from infinitygene treelambda-coalescent

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15) Random measures (60G57) Transition functions, generators and resolvents (60J35) Exchangeability for stochastic processes (60G09)

Abstract: We consider the compact space of pairs of nested partitions of $mathbbN$, where by analogy with models used in molecular evolution, we call "gene partition" the finer partition and "species partition" the coarser one. We introduce the class of nondecreasing processes valued in nested partitions, assumed Markovian and with exchangeable semigroup. These processes are said simple when each partition only undergoes one coalescence event at a time (but possibly the same time). Simple nested exchangeable coalescent (SNEC) processes can be seen as the extension of $Lambda$-coalescents to nested partitions. We characterize the law of SNEC processes as follows. In the absence of gene coalescences, species blocks undergo $Lambda$-coalescent type events and in the absence of species coalescences, gene blocks lying in the same species block undergo i.i.d. $Lambda$-coalescents. Simultaneous coalescence of the gene and species partitions are governed by an intensity measure $u_s$ on $(0,1]imes{mathcalM}_1([0,1])$ providing the frequency of species merging and the law in which are drawn (independently) the frequencies of genes merging in each coalescing species block. As an application, we also study the conditions under which a SNEC process comes down from infinity.

Recommendations

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Cited in

(9)

• Particle systems with coordination
• Population dynamics and statistical physics in synergy. Abstracts from the workshop held March 6--12, 2022
• Convergence of metric two-level measure spaces
• Trees within trees. II: Nested fragmentations
• Trees within trees: simple nested coalescents
• Fragmentations with self-similar branching speeds
• Discrete coalescent trees
• Coagulation-transport equations and the nested coalescents
• Algebraic two-level measure trees

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