Population Dynamics and Random Genealogies

DOI10.1080/15326340802437728zbMATH Open1390.92113OpenAlexW2015255387MaRDI QIDQ3548735FDOQ3548735

Authors: Amaury Lambert 

Publication date: 17 December 2008

Published in: Stochastic Models (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1080/15326340802437728

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zbMATH Keywords

coalescentpopulation geneticssplitting treediffusion approximationevolutiongenealogypopulation dynamicsbranching processextinction probabilityecologyfixation probabilitygenetic driftheight processcontinuous-state branching processRay-Knight theoremsquasi-stationaryharmonic transformYaglom distributionLévy processstochastic flow of bridgesstochastic flow of subordinators

Mathematics Subject Classification ID

Processes with independent increments; Lévy processes (60G51) Genetics and epigenetics (92D10) Applications of branching processes (60J85) Population dynamics (general) (92D25) Branching processes (Galton-Watson, birth-and-death, etc.) (60J80)

Cites Work

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Cited In (48)

• Exact simulation of the genealogical tree for a stationary branching population and application to the asymptotics of its total length
• The coalescent structure of uniform and Poisson samples from multitype branching processes
• Skeletal stochastic differential equations for superprocesses
• Neutral and niche forces as drivers of species selection
• Skeletal stochastic differential equations for continuous-state branching processes
• Approximation of the allelic frequency spectrum in general supercritical branching populations
• Random ultrametric trees and applications
• Probabilités et biologie
• Bootstrap maximum likelihood for quasi-stationary distributions
• Exponentiality of first passage times of continuous time Markov chains
• Trees within trees: simple nested coalescents
• Lévy processes conditioned on having a large height process
• Markov branching processes with disasters: extinction, survival and duality to \(p\)-jump processes
• Transient one-dimensional diffusions conditioned to converge to a different limit point
• The contour of splitting trees is a Lévy process
• Random walk Green kernels in the neutral Moran model conditioned on survivors at a random time to origin
• Kingman's coalescent with erosion
• Totally ordered measured trees and splitting trees with infinite variation
• Dynamics of fitness distributions in the presence of a phenotypic optimum: an integro-differential approach
• Quasi-stationary distributions and diffusion models in population dynamics
• Convergence rates for the degree distribution in a dynamic network model
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• The coalescent point process of multi-type branching trees
• Different closed-form expressions for generalized entropy rates of Markov chains
• On discrete-time multiallelic evolutionary dynamics driven by selection
• Change of measure in the lookdown particle system
• Extinction times of an inhomogeneous Feller diffusion process: a PDE approach
• Coagulation-transport equations and the nested coalescents
• Time to absorption for a heterogeneous neutral competition model
• The coalescent point process of branching trees
• On Hille-type approximation of degenerate semigroups of operators
• Exit times for an increasing Lévy tree-valued process
• Hamiltonian analysis of subcritical stochastic epidemic dynamics
• Totally ordered measured trees and splitting trees with infinite variation. II: Prolific skeleton decomposition
• Recovering the Brownian coalescent point process from the Kingman coalescent by conditional sampling
• Quasi-stationary distributions for discrete-state models
• Nonconservative diffusions on \([0, 1]\) with killing and branching: applications to Wright-Fisher models with or without selection
• Generalized population models and the nature of genetic drift
• On a problem in population structure
• Trees within trees. II: Nested fragmentations
• Lévy processes with marked jumps. I: Limit theorems
• Spectral analysis of a class of Lévy-type processes and connection with some spin systems
• Splitting Trees Stopped when the First Clock Rings and Vervaat's Transformation
• A Lamperti-type representation of continuous-state branching processes with immigration
• Population growth combined with wide offspring distributions can increase fixation rate and reduce genetic diversity
• Limit theorems for supercritical age-dependent branching processes with neutral immigration
• Some harmonic functions for killed Markov branching processes with immigration and culling
• Simulation from quasi-stationary distributions on reducible state spaces

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