Probability Models for DNA Sequence Evolution
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(only showing first 100 items - show all)- Stochastic models for heterogeneous DNA sequences
- Mathematical population genetics. I: Theoretical introduction.
- Applying the Thorne-Kishino-Felsenstein model to sequence evolution on a star-shaped tree
- Fixation probabilities and hitting times for low levels of frequency-dependent selection
- The Wright-Fisher site frequency spectrum as a perturbation of the coalescent's
- Lines of descent under selection
- Genealogical properties of subsamples in highly fecund populations
- The third moments of the site frequency spectrum
- Single and simultaneous binary mergers in Wright-Fisher genealogies
- Invasion probabilities, hitting times, and some fluctuation theory for the stochastic logistic process
- Modeling nucleotide evolution: A heterogeneous rate analysis
- Population genetics of neutral mutations in exponentially growing cancer cell populations
- Stochastic coalescence in logarithmic time
- Wright-Fisher diffusion with negative mutation rates
- The diversity of a distributed genome in bacterial populations
- An accurate approximation for the expected site frequency spectrum in a Galton-Watson process under an infinite sites mutation model
- Modelling and simulating Lenski's long-term evolution experiment
- The split-and-drift random graph, a null model for speciation
- An eco-evolutionary approach of adaptation and recombination in a large population of varying size
- Markov jump processes in estimating sharing of identity by descent
- On the waiting time until coordinated mutations get fixed in regulatory sequences
- Probabilistic structures in evolution
- Moran process and Wright-Fisher process favor low variability
- Solving the selection-recombination equation: ancestral lines and dual processes
- Simple conditions for convergence of sequential Monte Carlo genealogies with applications
- Haldane's formula in Cannings models: the case of moderately weak selection
- Multivariate phase-type theory for the site frequency spectrum
- Exact site frequency spectra of neutrally evolving tumors: a transition between power laws reveals a signature of cell viability
- Lines of descent in the deterministic mutation-selection model with pairwise interaction
- Rates of convergence in the two-island and isolation-with-migration models
- Uniform in time propagation of chaos for a Moran model
- The eigenvalues of hyperoctahedral descent operators and applications to card-shuffling
- A compendium of covariances and correlation coefficients of coalescent tree properties
- The impact of randomness on the distribution of wealth: some economic aspects of the Wright-Fisher diffusion process
- Spatially inhomogeneous populations with seed-banks. II: clustering regime
- Diffusion dynamics on the coexistence subspace in a stochastic evolutionary game
- Developments in coalescent theory from single loci to chromosomes
- Evolution probabilities and phylogenetic distance of dinucleotides
- Modifiers of mutation rate in selectively fluctuating environments
- Chromosome painting: how recombination mixes ancestral colors
- Consistency and identifiability of the polymorphism-aware phylogenetic models
- Local fluctuations of genetic processes defined on two time scales, with applications to effective size estimation
- A new general analytical approach for modeling patterns of genetic differentiation and effective size of subdivided populations over time
- Tree-like reticulation networks -- when do tree-like distances also support reticulate evolution?
- The internal branch lengths of the Kingman coalescent
- Estimation of the variance effective population size in age structured populations
- Effect of drift, selection and recombination on the equilibrium frequency of deleterious mutations
- The site-frequency spectrum associated with \(\varXi\)-coalescents
- Multi-colony Wright-Fisher with seed-bank
- An alternative derivation of the stationary distribution of the multivariate neutral Wright-Fisher model for low mutation rates with a view to mutation rate estimation from site frequency data
- On the distribution of interspecies correlation for Markov models of character evolution on Yule trees
- In and out of equilibrium. II: Evolution in repeated games with discounting and complexity costs
- Global divergence of spatial coalescents
- The common ancestor process revisited
- Change of measure in the lookdown particle system
- Single-crossover recombination and ancestral recombination trees
- Stochastically-induced bistability in chemical reaction systems
- Spatial autocorrelation for subdivided populations with invariant migration schemes
- The general recombination equation in continuous time and its solution
- Metapopulation inbreeding dynamics, effective size and subpopulation differentiation -- a general analytical approach for diploid organisms
- Looking down in the ancestral selection graph: a probabilistic approach to the common ancestor type distribution
- Demographic inference using genetic data from a single individual: separating population size variation from population structure
- A unifying framework reveals key properties of multilevel selection
- The species problem from the modeler's point of view
- On the stationary distribution of the block counting process for population models with mutation and selection
- Spatial Moran models. II: Cancer initiation in spatially structured tissue
- Solving the migration-recombination equation from a genealogical point of view
- An evolutionary model that satisfies detailed balance
- Moran process version of the tug-of-war model: behavior revealed by mathematical analysis and simulation studies
- Partitioning, duality, and linkage disequilibria in the Moran model with recombination
- Reversible polymorphism-aware phylogenetic models and their application to tree inference
- Mutational pattern of a sample from a critical branching population
- Modelling evolution in a spatial continuum
- Efficient Construction of Test Inversion Confidence Intervals Using Quantile Regression
- Markov models for accumulating mutations
- The gene evolution model and computing its associated probabilities
- Population Dynamics and Random Genealogies
- A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer
- Upper bound on the rate of adaptation in an asexual population
- Interacting particle systems as stochastic social dynamics
- scientific article; zbMATH DE number 1181217 (Why is no real title available?)
- scientific article; zbMATH DE number 1761225 (Why is no real title available?)
- Random ultrametric trees and applications
- On the accuracy in high-dimensional linear models and its application to genomic selection
- Quasi equilibrium, variance effective size and fixation index for populations with substructure
- Hitting times and interlacing eigenvalues: a stochastic approach using intertwinings
- Mixed Model Analysis of DNA Sequence Evolution
- The Moran model with selection: fixation probabilities, ancestral lines, and an alternative particle representation
- On the eigenvalue effective size of structured populations
- A spatio-temporal point process model for particle growth
- The structure of an outbreak on a college campus
- Fitness Landscape, Red Queen, Evolutionary Enigmas, and Applications to Virology
- The recombination equation for interval partitions
- Efficiently inferring the demographic history of many populations with allele count data
- Avalanches in a short-memory excitable network
- The total external length of the evolving Kingman coalescent
- Traveling waves of selective sweeps
- Analysis of market weights under volatility-stabilized market models
- Stochastic coalescence in logarithmic time
- The effect of recombination on the speed of evolution
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