The gene evolution model and computing its associated probabilities

DOI10.1145/1502793.1502796MaRDI QIDQ3452203zbMATH OpenOpenAlexWikidataFDO

Authors Lars Arvestad, Jens Lagergren, Bengt Sennblad

Publication date 11 November 2015

Published in Journal of the ACM (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1145/1502793.1502796

zbMATH Keywords

duplicationevolutiongenelossphylogenyprobabilityreconciliation

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15)

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Cited in

(17)

• On a coupled map lattice formulation of the evolution of genetic sequences
• Computing the probability of gene trees concordant with the species tree in the multispecies coalescent
• Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods
• Gain-loss-duplication models for copy number evolution on a phylogeny: exact algorithms for computing the likelihood and its gradient
• Registering the evolutionary history in individual-based models of speciation
• Evolution probabilities and phylogenetic distance of dinucleotides
• Feasibility algorithms for the duplication-loss cost
• Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models
• Consistency and convergence rate of phylogenetic inference via regularization
• Complexity insights of the minimum duplication problem
• DLS-trees: a model of evolutionary scenarios
• A linear-time algorithm for reconciliation of non-binary gene tree and binary species tree
• Level-dependent QBD models for the evolution of a family of gene duplicates
• A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer
• scientific article; zbMATH DE number 2074310 (Why is no real title available?)
• Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss
• Mathematical Foundations of Computer Science 2004

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