Multi-colony Wright-Fisher with seed-bank
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Publication:2397602
Abstract: We consider a multi-colony version of the Wright-Fisher model with seed-bank that was recently introduced by Blath et al. Individuals live in colonies and change type via resampling and mutation. Each colony contains a seed-bank that acts as a genetic reservoir. Individuals can enter the seed-bank and become dormant or can exit the seed-bank and become active. In each colony at each generation a fixed fraction of individuals swap state, drawn randomly from the active and the dormant population. While dormant, individuals suspend their resampling. While active, individuals resample from their own colony, but also from different colonies according to a random walk transition kernel representingmigration. Both active and dormant individuals mutate. We derive a formula for the probability that two individuals drawn randomly from two given colonies are identical by descent, i.e., share a common ancestor. This formula, which is formulated in Fourier language, is valid when the colonies form a discrete torus. We consider the special case of a symmetric slow seed-bank, for which in each colony half of the individuals are in the seed-bank and at each generation the fraction of individuals that swap state is small. This leads to a simpler formula, from which we are able to deduce how the probability to be identical by descent depends on the distance between the two colonies and various relevant parameters. Through an analysis of random walk Green functions, we are able to derive explicit scaling expressions when mutation is slower than migration. We also compute the spatial second moment of the probability to be identical by descent for all parameters when the torus becomes large. For the special case of a symmetric slow seed-bank, we again obtain explicit scaling expressions.
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- A new coalescent for seed-bank models
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- Probability Models for DNA Sequence Evolution
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- Strong seed-bank effects in bacterial evolution
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Cited in
(12)- Spatially inhomogeneous populations with seed-banks. I: Duality, existence and clustering
- Statistical tools for seed bank detection
- The seed bank coalescent with simultaneous switching
- Structural properties of the seed bank and the two island diffusion
- Genealogy of a Wright-Fisher Model with Strong SeedBank Component
- Extinction threshold and large population limit of a plant metapopulation model with recurrent extinction events and a seed bank component
- Spatial populations with seed-bank: finite-systems scheme
- Spatial populations with seed-banks in random environment. III: Convergence towards mono-type equilibrium
- Spatial populations with seed-bank: well-posedness, duality and equilibrium
- Spatially inhomogeneous populations with seed-banks. II: clustering regime
- Fisher-Wright model with deterministic seed bank and selection
- The ancestral process of long-range seed bank models
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