Fisher-Wright model with deterministic seed bank and selection
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Publication:2399073
DOI10.1016/J.TPB.2016.11.005zbMATH Open1369.92067arXiv1605.06255OpenAlexW2307370705WikidataQ33458798 ScholiaQ33458798MaRDI QIDQ2399073FDOQ2399073
Authors: Bendix Koopmann, Aurélien Tellier, Daniel Živković, J. Müller 
Publication date: 21 August 2017
Published in: Theoretical Population Biology (Search for Journal in Brave)
Abstract: Seed banks are a common characteristics to many plant species, which allow storage of genetic diversity in the soil as dormant seeds for various periods of time. We investigate an above-ground population following a Fisher-Wright model with selection coupled with a deterministic seed bank assuming the length of the seed bank is kept constant and the number of seeds is large. To assess the combined impact of seed banks and selection on genetic diversity, we derive a general diffusion model. The applied techniques outline a path of approximating a stochastic delay differential equation by an appropriately rescaled stochastic differential equation, which is a common issue in statistical physics. We compute the equilibrium solution of the site-frequency spectrum and derive the times to fixation of an allele with and without selection. Finally, it is demonstrated that seed banks enhance the effect of selection onto the site-frequency spectrum while slowing down the time until the mutation-selection equilibrium is reached.
Full work available at URL: https://arxiv.org/abs/1605.06255
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Cites Work
- Title not available (Why is that?)
- Title not available (Why is that?)
- Mathematical population genetics. I: Theoretical introduction.
- Higher-order implicit strong numerical schemes for stochastic differential equations
- Title not available (Why is that?)
- Title not available (Why is that?)
- Multiple time scale dynamics
- Asymptotic methods for the Fokker-Planck equation and the exit problem in applications
- Coalescent theory for seed bank models
- The ancestral process of long-range seed bank models
- A new coalescent for seed-bank models
- Asymptotic Expansion for Inverse Moments of Binomial and Poisson Distributions
- The frequency spectrum of a mutation, and its age, in a general diffusion model
- Quiescence, excitability, and heterogeneity in ecological models
- Title not available (Why is that?)
Cited In (17)
- Statistical tools for seed bank detection
- The seed bank coalescent with simultaneous switching
- Structural properties of the seed bank and the two island diffusion
- Multi-colony Wright-Fisher with seed-bank
- Effects of population- and seed bank size fluctuations on neutral evolution and efficacy of natural selection
- Seed bank Cannings graphs: how dormancy smoothes random genetic drift
- Invasion and fixation of microbial dormancy traits under competitive pressure
- Extinction scenarios in evolutionary processes: a multinomial Wright-Fisher approach
- Genealogy of a Wright-Fisher Model with Strong SeedBank Component
- Are the better cooperators dormant or quiescent?
- On the stationary distribution of the block counting process for population models with mutation and selection
- The impact of selection in the \(\Lambda\)-Wright-Fisher model
- The stochastic Fisher-KPP equation with seed bank and on/off branching coalescing Brownian motion
- Joint effect of changing selection and demography on the site frequency spectrum
- Seed banks can help to maintain the diversity of interacting phytoplankton species
- Dormancy in stochastic population models
- Life-history traits and the replicator equation
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