Comparing methods for species tree estimation with gene duplication and loss

DOI10.1007/978-3-030-74432-8_8zbMATH Open1480.92158OpenAlexW3127581035MaRDI QIDQ2062005FDOQ2062005

Tandy J. Warnow, Mrinmoy Saha Roddur, James Willson

Publication date: 21 December 2021

Full work available at URL: https://doi.org/10.1101/2021.02.05.429947

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• Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss
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zbMATH Keywords

gene duplication and lossspecies-tree inference

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15) Taxonomy, cladistics, statistics in mathematical biology (92B10)

Cites Work

• Comparison of phylogenetic trees
• The coalescent
• Bayesian-weighted triplet and quartet methods for species tree inference
• Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss

Cited In (3)

• Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss
• Reconciling a gene tree to a species tree under the duplication cost model
• Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models

Uses Software

• DupTree
• SimPhy
• INDELible
• iGTP
• MulRF
• ASTRID
• FastMe
• FastTree
• ASTRAL-Pro
• FastMulRFS
• PRANC
• STAG

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