Fast and accurate branch support calculation for distance-based phylogenetic placements

DOI10.1007/978-3-031-06220-9_3MaRDI QIDQ2163944zbMATH OpenOpenAlexFDO

Authors Bin Hasan Navid, Avijit Biswas, M. Balaban, Siavash Mirarab, Md. Shamsuzzoha Bayzid

Publication date 11 August 2022

Full work available at URL https://doi.org/10.1007/978-3-031-06220-9_3

zbMATH Keywords

bootstrappingbranch supportphylogenetic placement

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15)

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• scientific article; zbMATH DE number 7205098
• Distance based methods in phylogenetic tree construction

Cites work

• A few logs suffice to build (almost) all trees. II
• Absolute convergence: True trees from short sequences
• Applying the bootstrap in phylogeny reconstruction
• Bootstrap methods: another look at the jackknife
• scientific article; zbMATH DE number 1945176 (Why is no real title available?)
• scientific article; zbMATH DE number 1746438 (Why is no real title available?)
• Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
• On the asymptotic accuracy of Efron's bootstrap
• Scalable and accurate phylogenetic placement using pplacer-XR

Cited in

(2)

• Scalable and accurate phylogenetic placement using pplacer-XR
• Phylogenetic placement problem: a hyperbolic embedding approach

Describes a project that uses

Uses Software

• SEPP
• MLTreeMap
• APPLES
• HmmUFOtu
• UShER
• DEPP
• INSTRAL
• PhyloGeoTool
• EPA-ng
• pplacer
• FastTree
• Scoredist
• PhyloSift
• TIPP
• tripVote
• ASTRAL-II

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