Fast and accurate branch support calculation for distance-based phylogenetic placements

DOI10.1007/978-3-031-06220-9_3zbMath1496.92061OpenAlexW4285309845MaRDI QIDQ2163944

Avijit Biswas, Siavash Mirarab, Bin Hasan Navid, Metin Balaban, Md. Shamsuzzoha Bayzid

Publication date: 11 August 2022

Full work available at URL: https://doi.org/10.1007/978-3-031-06220-9_3

zbMATH Keywords

bootstrappingphylogenetic placementbranch support

Mathematics Subject Classification ID

Problems related to evolution (92D15) Genetics and epigenetics (92D10)

Uses Software

• ASTRAL-II
• pplacer
• FastTree
• PhyloSift
• TIPP
• Scoredist
• SEPP
• MLTreeMap
• APPLES
• EPA-ng
• PhyloGeoTool
• INSTRAL
• UShER
• HmmUFOtu
• tripVote
• DEPP

Cites Work

• On the asymptotic accuracy of Efron's bootstrap
• Bootstrap methods: another look at the jackknife
• A few logs suffice to build (almost) all trees. II
• Scalable and accurate phylogenetic placement using pplacer-XR
• Applying the bootstrap in phylogeny reconstruction
• Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
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