Applying the bootstrap in phylogeny reconstruction

DOI10.1214/SS/1063994980MaRDI QIDQ5965024zbMATH OpenOpenAlexFDO

Authors Pamela S. Soltis, Douglas E. Soltis

Publication date 2 March 2016

Published in Statistical Science (Search for Journal in Brave)

Full work available at URL https://projecteuclid.org/euclid.ss/1063994980

zbMATH Keywords

bootstrapjackknifephylogenysupport

Mathematics Subject Classification ID

Nonparametric statistical resampling methods (62G09) Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15)

Recommendations

• Bootstrapping a method of phylogenetic inference
• Bootstrapping phylogenetic trees: theory and methods
• Bootstrapping phylogenies: Large deviations and dispersion effects
• Choosing the tree which actually best explains the data: another look at the bootstrap in phylogenetic reconstruction.

Cites work

• Bootstrap confidence intervals for a class of parametric problems
• Bootstrap confidence levels for phylogenetic trees
• Bootstrap methods: another look at the jackknife
• Bootstrapping phylogenies: Large deviations and dispersion effects
• scientific article; zbMATH DE number 3831742 (Why is no real title available?)
• scientific article; zbMATH DE number 3782216 (Why is no real title available?)
• scientific article; zbMATH DE number 1342309 (Why is no real title available?)
• scientific article; zbMATH DE number 3433376 (Why is no real title available?)
• Symplectic leaves and deformation quantization
• Taxonomy with confidence
• Tests of phylogenetic hypotheses under generalized models

Cited in

(11)

• Bootstrapping a method of phylogenetic inference
• Choosing the tree which actually best explains the data: another look at the bootstrap in phylogenetic reconstruction.
• Predicting the ligand-binding properties of \textit{Borrelia burgdorferi} s.s. Bmp proteins in light of the conserved features of related \textit{Borrelia} proteins
• Fast and accurate branch support calculation for distance-based phylogenetic placements
• Bootstrapping algorithms for gene duplication and speciation events
• Bayesian support is larger than bootstrap support in phylogenetic inference: a mathematical argument
• Bootstrapping phylogenies: Large deviations and dispersion effects
• Performance comparison between bootstrap and multiscale bootstrap for assessing phylogenetic tree for RNA polymerase
• Bootstrap confidence levels for phylogenetic trees
• Bootstrapping phylogenetic trees: theory and methods
• Sufficient bootstrapping

Describes a project that uses

Uses Software

• PAUP*

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