Solvent accessibility, residue charge and residue volume, the three ingredients of a robust amino acid substitution matrix

DOI10.1016/J.JTBI.2006.12.014MaRDI QIDQ2209999zbMATH OpenOpenAlexWikidataFDO

Authors Hani Goodarzi, Ali Katanforoush, Noorossadat Torabi, Hamed Shateri Najafabadi

Publication date 5 November 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2006.12.014

zbMATH Keywords

amino acid substitution matrixcost measure matrixgenetic codeload minimizationoptimalityscoring matrix

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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• The standard genetic code enhances adaptive evolution of proteins

Cited in

(2)

• Relative importance of secondary structure and solvent accessibility to the stability of protein mutants. A case study with amino acid properties and energetics on T4 and human lysozymes
• Significant residue features revealed by eigenvalue decomposition analysis of BLOSUM matrices

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