scientific article; zbMATH DE number 434721

MaRDI QIDQ3139560zbMATH OpenFDO

Authors A. M. Leontovich

Publication date 13 April 1994

zbMATH Keywords

similarity measureproteinsnucleotidesbiological sequence analysisamino acid residuesletter substitution weight matrixsearch of similar fragments

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Approximations to statistical distributions (nonasymptotic) (62E17) Statistical distribution theory (62E99)

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(3)

• Solvent accessibility, residue charge and residue volume, the three ingredients of a robust amino acid substitution matrix
• Testing homology with contact accepted mutatiOn (CAO): A contact-based Markov model of protein evolution
• Pseudo-rate matrices, beyond Dayhoff's model

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